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GT18067

CSHL Arabidopsis genetrap mutant lines

Original: GT18067

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18067

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2979730 [Map]; Strand: w
      • AT5G09600.3 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: intron2 (CDS)
      • AT5G09600.1 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: intron1 (CDS)
      • AT5G09600.2 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: intron2 (5UTR)
    2. Chromosome: 4; Position: 15557529 [Map]; Strand: c
      • AT4G32210.1 - [+] show detail - succinate dehydrogenase 3-2
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT18067 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT GCATAACTTG CGGACCAACA CTAGTCATAA 
    CTTGTGGACC ACCTGAAAAC GTTGGCTGTG GTTGAACCAC GTTGTAACCC 
    CATTGCAGCT TGCTGGTAAT GCTCAACCTT CCTGGGGTAG TTCATACATT 
    GGTCAGAACT ATGCAAGTTT CTCCAGAGCT TTCGGGTAGG TTTGTGTTTG 
    TTTCTTGTGC TTTTTATACC TATTAGAATT ACTCTGTGGA TGTCATTTCG 
    ACTACGTGTT GTTTTCTTTT ATAGGTCAAA ACCTGTTGTG AATGACATTC 
    TTGGTACTGG TTTGGGCACT AACAATGCCA TTAGAGAGGA GAGAGAGGTA 
    AAATGACTTT GTCTACATTT TGTTTGATTT TTGCTTTTGT AATGTTTAAG 
    AGCAGCTTAA CTTATCCTTT TTGCCTGGNG ATCCTTGTCT CGATTTTTCC 
    AGAAGTCAAA ATCTACTGAA GCTGCAATTG TTGGTGCTCA ATTGACTCGA 
    TCTTTCCGTG CTCTTGATGT GGGAACATCG AAACGATTGT TTTCTACAAT 
    CTCAGGGGAT ATAAAGAC

AT4G32210.1

Model type
Protein coding
Short Description
succinate dehydrogenase 3-2
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-1.
Computational Description
succinate dehydrogenase 3-2 (SDH3-2); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-1 (TAIR:AT5G09600.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.1

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1); Has 400 Blast hits to 400 proteins in 121 species: Archae - 0; Bacteria - 45; Metazoa - 67; Fungi - 61; Plants - 100; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.2

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1); Has 364 Blast hits to 364 proteins in 113 species: Archae - 0; Bacteria - 45; Metazoa - 67; Fungi - 62; Plants - 63; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.3

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1).
Link
InterPro Scan - TAIR