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GT17483

CSHL Arabidopsis genetrap mutant lines

Original: GT17483

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17483

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2981329 [Map]; Strand: w
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17483 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    CCCAAGAGCT TGTTGTCTGT TGACATTTCA CGCTCACCTT GAAGCACCCT 
    GATCCCAACT TGAGTCTGAT TATCGGCTGC AGTTGAGAAC ACCTTCAAGA 
    GAATGAAACG AGACAATCAA CATTTTAGTA AAAACTTGAC AAAAACAATG 
    GTAGCTTTGG ATGGCTCATA AATTAGTATA TATCACAGGA ATGTGCTTTC 
    ATGACCCCTG TTAAAGAAGA ACCAGAGAGA TCTCGAGCGT ACAAAGAGAA 
    TCGAAGAGAT TGTGATTGCA AAAGTGTTAC TTATATAGAG AAGAGGAGAT 
    TCTGTGTTCG TAGTTGGAAT AGGAATCGCA GGAGTTATAG AGATAAGAGC 
    TCCGGTCCCA AGTCATTTTC GATTTGGAGG ACTCGCATAG AGTTTTAAAT 
    TTTTTAATTT TTTTAACAAA CGCAAAAATT AGCCTGATTA AAGTTATTGA 
    TAGAAATTGC ATTAAAAATT AAAACATCAT CACTGCAAAT AAAACAATAT 
    TTTAACTCAT CTTTTCCTGA AATTGAAGTT GACAAATTTC ATGAAGAAAA 
    CTTGTAGCAA AAAGAGTAAC GTAGCAACAG AACTTTGGTA AACATTTATT 
    ACATCATTCA AAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3374564 [Map]; Strand: c
      • AT5G10690.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing pro...
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: GT17483 - 5-prime edge 
    CCTACTTTCT CCCTGCTTGG GAGAATTGAT CTAGTTGGCA TTCCACCATC 
    TCCAAGAGGA GTCCCTCAGA TCGAAGTGAC ATTTGACATT GATGCCAATG 
    GCATTGTCAC TGTTTCCGCC AAGGACAAGA CGACTGGTGA AGTACAACAG 
    ATCACAATCC GATCCTCTGA GTGTTGCGCC TTCCAAGACG AGCACCATCA 
    ATTCCAAATG AGTTGCTACT GATACAGATT TAGTTCTTTC AATATATTCA 
    CTTTTGTCAG AAAGAAAATG AACAAGAAAC AAAACCTTGT TCCCTAACCT 
    TGTTCTTCTT CGAGTTCTCT TGCAGCCTAT GCTGTTGGAG ATTCCTTCTT 
    CCCTTGCACC CCTTCCTTCT TTGTTCCTTC CTCTGGTAAT TCTTCTATTT 
    GAGCCTTTGT TTCGGCTGTT TCTTCTTTCA CTCTGCTGCT TTCGCTCTCT 
    TCCTCTTTAA CTTCTGCTTC TTCCTGTTCC TCTTGTTTAC TTTTTTCGAA 
    ATTCACAGCT TCATTCTTTT CCTGTAGTAG TAGCAACTGT CTCGCTATTT 
    TCCTCATCAT CAACTTTCTT GCTATCAAAC TCCTCATAGA TCTCAATCTT 
    CTTGCTATCG ACCAACACTT CTCGTCTCTT CTGCCTAAAC CCGCGGAACA 
    AATCACTCGT CTCATCCAAA ACCGAAACAT ACTCAGGCTG GTGGCTCTCA 
    AACTTATACT CCTCAATGAT CTTCAACTCT TTTGCCTCAG C

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10690.1

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR