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GT17014

CSHL Arabidopsis genetrap mutant lines

Original: GT17014

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17014

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 266718 [Map]; Strand: c
      • AT2G01580.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -813; Region: promoter
      • AT2G01590.1 - [+] show detail - chlororespiratory reduction 3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17014 - 3-prime edge 
    CGTTTTCATC CCTAGGTGTT ATCCACCATC TACTCCATCA CCAGAGCTTC 
    AACGCCTACT ATGGCGTCTC TAACTAATGA CTCACCGTCT CCACTTCCTT 
    CATCACACTC GACGAGAAAG GACTGTTTCC AGACACTAAA TAAAAGTGTA 
    AGACAAGACA AAAACAATGA AAAAGAGGAA TCTGATAATA TTTACAATGG 
    TCCAAGAGGA CAAAAATGAT ATTATCCATT CTTTTTTACT GATTTCCCTG 
    TTCAAACGTT GTTCATATCA CTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24047447 [Map]; Strand: c
      • AT5G59680.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17014 - 5-prime edge 
    CCTACTTTCT CCCTGGATAT ACCCGAAAGT AGAGATTCAG AGAACCAGAC 
    TGGGTGATAT AAGAATCATT ATCTCCCATG GGCCGTATTT CCAAGGCTGA 
    GATCATTGGT GTAGTTTCCC CAGTCTTAAC AAGACAAATC TGCAACGAGT 
    TTGATGTTGG TTTGTGAATG ACCTCTTTCC GTGTACCATT CTCTAGTCTA 
    TACAAATCGA TCGTGGCCCA TGGATTTGGT CCAAGATACA GATCAAACCT 
    CGGGTCTTTG TCTTGGCCAT CATAATTTCC ATAGATAAAC CAAGCTCTGA 
    TCAGATGATT TATTCCCTTC TCTACGTTTA GATTGTAGCA GTTCCGTATT 
    CCTTCTGGAA AATATCTCAG CGTTGAGTAT GGCTTCAGAA ATCTAGCCTC 
    CATATTTGCC TGGACTTTAC CAGTTTTTCC ACTCTGGATG AATGTTGCGT 
    CTGAAGAGTA CTCTATTTCA GTATTTGATT CTTAATAAGG AGACAGTTCA 
    TTGGCGGGGA GCCCGCAATC CAAACTGATG AATCCTGTAG AACAGAAATG 
    GATAAAAATT AACACTACGA TCAAGAACAA AAATGGTAGT AAGATGG

AT2G01580.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07510.2); Has 129 Blast hits to 129 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01590.1

Model type
Protein coding
Short Description
chlororespiratory reduction 3
Curator Summary
Likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located in the membrane fraction of chloroplast. Mutant has impaired NAD(P)H dehydrogenase activity.
Computational Description
CHLORORESPIRATORY REDUCTION 3 (CRR3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast, NAD(P)H dehydrogenase complex (plastoquinone), membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; Has 17 Blast hits to 17 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59680.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G59650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR