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GT16178

CSHL Arabidopsis genetrap mutant lines

Original: GT16178

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16178

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16870837 [Map]; Strand: c
      • AT2G40400.1 - [+] show detail - Protein of unknown function (DUF399 and DUF3411)
        Distance: 0; Region: exon3 (CDS)
      • AT2G40400.2 - [+] show detail - Protein of unknown function (DUF399 and DUF3411)
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT16178 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTATCGCTCG 
    GGTAATGAAT GCGGCTGGTA GGAGACGAGA TGCCCTTCCC CAAGTATGTT 
    TTCTATGATT TCGTTTATGA GACTGACTCT CTGTTTGATT GTTACTTACT 
    GTATCTGGCG TTCTTATGCT TACAGTAAAA ATGAACTCTA AACCTGATCT 
    CCATTATTAG TATTAGTACA GTTGTACTTT ATTCAGCACT CAGTTTATTC 
    TGCCCTATTT TTTTTGCTGT TTAGAGTTGA CTGTGGAGTT GAGTTTTACT 
    TTCTTTTGCT CACTTTGCTT TTATGTCTTA GTATGCTGAT AGATTTTTTT 
    CCATTGTTCC AGGACATTCA AAAAGGATTA GACCTTGGTC TGGTGTCACC 
    TGAGATTCTG CAGAATTTCT TTGATTTGGA GCAATATCCT CTTATTTCAG 
    AGCTTACACA ACGGTTCCAG GTATATCCAT TCCGGAAGAT ATTCCTCTAG 
    TGAATCTTTT TCTTCGAATA TGCTTTTCAC TAAATAATGT GTTAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16870779 [Map]; Strand: c
      • AT2G40400.1 - [+] show detail - Protein of unknown function (DUF399 and DUF3411)
        Distance: 0; Region: exon3 (CDS)
      • AT2G40400.2 - [+] show detail - Protein of unknown function (DUF399 and DUF3411)
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT16178 - 5-prime edge 
    CCTACTTTCT CCCTGCCGAG CGATTTCTGC TCGGTCAAAG CAGTTTCTGC 
    TGCAGGGTCT GGCCGCAGAA TACCACAAGA AATCAGCAAC TGGAGATTCA 
    CCCTCTTTCC GCAAAAACTG TCTTTCAGGA TCAAGTAACA CAACAAGTTG 
    ACTTTTCTTC GGAATCTTCC TAGAGATCCT TGCCGGCAAT CCTGTTCCCC 
    TTGACCCATA CTCAACATGG TTTGCCCCTG TCACCACTAC CAGCATACCA 
    GTTCCACCTC CATCTGCAAC TGCTTGTACA ATAACTTGAG ACATTGTATG 
    GTCTTCAACA ACTCTAGCTT GTGCCGACAA ATAAGAACTC GGTCCAAATG 
    GAACAATCTG TGTGAGTGGA TTCATATTGA GTGAAGAACT ACGTGAGAAG 
    GAAGTAAACC CTGAGATAAA CCCTGAACCC GCAGGAGGAG TGTATAATTT 
    ACGCTCAGAC TCTGATAGAC CACGGATACC CTCAGCTTGG ACAGTTCTTA 
    AAACCTGCAT CAAATTAAGC AGTGCGCAGC TAATTCTCAT CAGACTAACA 
    ATTAAAAAAA TGCATAATCT TCAATCAGAA AGGTTTCAGA TCAAGCTGCA 
    GGATCAAAAG GCTCAAGATT TCATGACAAT ATAGTAGTAT AAGACTCTAC 
    CTTGAGCGGA GTGCCACAAG CAATGAGTTT AACTCCGTTA TCGCGGCAGT 
    AACTTAAGAG AGGCTCATAC TCTTGCCAAC GTTGGACTGG CCAATGTGAT 
    ACATACGACT TCAATACCCT CTCATCCATC CTGCAACCAA TCCAGAAACA 
    TTGGAATCAA AAACACATTG CATTA

AT2G40400.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF399 and DUF3411)
Computational Description
Protein of unknown function (DUF399 and DUF3411); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF399 (InterPro:IPR007314), Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT3G56140.1); Has 496 Blast hits to 496 proteins in 118 species: Archae - 0; Bacteria - 198; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G40400.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF399 and DUF3411)
Computational Description
Protein of unknown function (DUF399 and DUF3411); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF399 (InterPro:IPR007314), Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT3G56140.1); Has 496 Blast hits to 496 proteins in 118 species: Archae - 0; Bacteria - 198; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Link
InterPro Scan - TAIR