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GT15812

CSHL Arabidopsis genetrap mutant lines

Original: GT15812

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15812

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2980388 [Map]; Strand: c
      • AT5G09600.3 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: exon5 (CDS)
      • AT5G09600.1 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: exon4 (CDS)
      • AT5G09600.2 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: exon5 (CDS)
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: -768; Region: promoter
    Flanking Genome Sequence: GT15812 - 3-prime edge
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AGGTATGATC TGCCTCACCT ACCCGAGTTT CTACCAAGTC CTTTACCATA
    CACAACAGCA ACTTCCAGTC ATCACCTCGG TTACTGCATT AGCCGCTATT
    TATCATACTA TCAAGAGTAC TCACTCACTC TTGACCCATT AAAAACCTTT
    ACCAAAGCTC TTTCGATGAA GCCGCCAAAG TCTCCAGTAA GAGTTTCTTT
    GAGATGATTA ATAAGGAGAC AAGAAAACAT TTGTTAAACT CTGTCTTGAA
    AAGGTAAAGA TTTAGCACCT GTTTCTTTGG ATTCGAGGCT TTTTTGGGGG
    TATGTTTGTT GCTTTTCTTT GTTCTCAGAC CTTTTTTGAA TGATGTAATA
    AATGTTTACC AAAGTTCTGT TGCTACGTTA CTCTTTTTGC TACAAGTTTT
    CTTCATGAAA TTTGTCAACT TCAATTTCAG GAAAAGATGA GTTAAAATAT
    TGTTTTATTT GCAGTGATGA TGTTTTAATT TTTAATGCAA TTTCTATCAA
    TAACTTTAAT CAGGCTAATT TTTGCGTTTG TTAAAAAAAT TAAAAAATTT
    AAAACTCTAT GCGAGTCCTC CAAATCAAAA ATGACTTGGG ACCGGAGCTC
    TTATCTCTAT AACTCCTGCG ATTCCTATTC CAACTACGAA CACAGAATCT
    CCTCTTCTCT ATATAAGTAA CACTTTTGCA ATCACAATCT CTTCGATTCT
    CTTTGTACGC TCGAGATCTC TCTGGT
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2980326 [Map]; Strand: c
      • AT5G09600.3 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: exon5 (CDS)
      • AT5G09600.1 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: exon4 (CDS)
      • AT5G09600.2 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: exon5 (CDS)
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: -830; Region: promoter
    2. Chromosome: 4; Position: 15556933 [Map]; Strand: w
      • AT4G32210.1 - [+] show detail - succinate dehydrogenase 3-2
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT15812 - 5-prime edge
    CCTGATCTAC CCATCTTCAG GTAGAGAAGG TAGCCAGCGA AAGTGACACC 
    GGTCAAGTAA ACCCCTGAGA TTCTGTTGAA AATCGATAGC ATGGAGTTCA
    TCTGAGGCTG GTAAACAGAA AGGTGAGGAG ATAAAGGGCG AAAGCTTTTG
    ATTTTTGGTT CCTCCTGTGT TGTCTTTATA TCCCCTGAGA TTGTAGAAAA
    CAATCGTTTC GATGTTCCCA CATCAAGAGC ACGGAAAGAT CGAGTCAATT
    GAGCACCAAC AATTGCAGCT TCAGTAGATT TTGACTTCTG GAAAAATCGA
    GACAAGGATC ACCAGGCAAA AAGGATAAGT TAAGCTGCTC TTAAACATTA
    CAAAAGCAAA AATCAAACAA AATGTAGACA AAGTCATTTT ACCTCTCTCT
    CCTCTCTAAT GGCATTGTTA GTGCCCAAAC CAGTACCAAG AATGTCATTC
    ACAACAGGTT TTGACCTATA AAAGAAAACA ACACGTAGTC GAAATGACAT
    CCACAGAGTA ATTCTAATAG GTATAAAAAG CACAAGAAAC AAACACAAAC
    CTACCCGAAA GCTCTGGAGA AACTTGCATA GTTCTGACCA ATGTATGAAC
    TACCCCAGGA AGGTTGAGCA TTACCAGCAA GCTGCAATGG GGTTACAACG
    TGGTTCAACC ACAGCCAACG TTTTCAGGTG GTCCACAAGT TATGACTAGT
    GTTGGTCCGC AAGTTATGAC TAGTGTCGGT CCTCCAATGG GGTTACAGGA
    ACCTTATT

AT4G32210.1

Model type
Protein coding
Short Description
succinate dehydrogenase 3-2
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-1.
Computational Description
succinate dehydrogenase 3-2 (SDH3-2); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-1 (TAIR:AT5G09600.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.1

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1); Has 400 Blast hits to 400 proteins in 121 species: Archae - 0; Bacteria - 45; Metazoa - 67; Fungi - 61; Plants - 100; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.2

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1); Has 364 Blast hits to 364 proteins in 113 species: Archae - 0; Bacteria - 45; Metazoa - 67; Fungi - 62; Plants - 63; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.3

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1).
Link
InterPro Scan - TAIR

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR