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GT15745

CSHL Arabidopsis genetrap mutant lines

Original: GT15745

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15745

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 266698 [Map]; Strand: c
      • AT2G01580.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -793; Region: promoter
      • AT2G01590.1 - [+] show detail - chlororespiratory reduction 3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15745 - 3-prime edge 
    TTTACCGACC GTTACCGTAC CGTTTTCATC CCTAGGTGTT ATCCACCATC 
    TACTCCATCA CCAGAGCTTC AACGCCTACT ATGGCGTCTC TAACTAGTGA 
    CTCACCGTCT CCACTTCCT

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT15745 - 3-prime edge 
    GGGTTATCCA CCATCTACTC CA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25262162 [Map]; Strand: w
      • AT5G62940.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: -3481; Region: intergenic
      • AT5G62950.3 - [+] show detail - RNA polymerase II, Rpb4, core protein
        Distance: 17; Region: intergenic
    Flanking Genome Sequence: GT15745 - 5-prime edge 
    CCTACTTTCT CCCTGGTTGT ATTATTCTCC TTTAGATAAT TATAGAACAT 
    ATTCCTCTAC ACTTTTGTGG GTCGTACCTC TATATTTTAA AGTTTAAATC 
    ATTTAGTATG GACCTGTTTT TTTTTTCTTG GTAAAGGAAG GGACGTAAAT 
    TGTTCGATCG ATTATCTTCT TAACTAAAAA GATAACAAAC TCAATCTAGT 
    TAATAAGCGT TTAAGAGGAG GGTTACAAAA TCAAAACATA AACTCAAC

AT2G01580.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07510.2); Has 129 Blast hits to 129 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01590.1

Model type
Protein coding
Short Description
chlororespiratory reduction 3
Curator Summary
Likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located in the membrane fraction of chloroplast. Mutant has impaired NAD(P)H dehydrogenase activity.
Computational Description
CHLORORESPIRATORY REDUCTION 3 (CRR3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast, NAD(P)H dehydrogenase complex (plastoquinone), membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; Has 17 Blast hits to 17 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G62940.1

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Curator Summary
HCA2 induces the formation of interfascicular cambium and regulates vascular tissue development in the aerial parts of the plant. Evidence from both gain of function and dominant negative alleles.
Computational Description
HIGH CAMBIAL ACTIVITY2 (HCA2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: TARGET OF MONOPTEROS 6 (TAIR:AT5G60200.1); Has 1915 Blast hits to 1778 proteins in 135 species: Archae - 0; Bacteria - 49; Metazoa - 135; Fungi - 61; Plants - 1116; Viruses - 0; Other Eukaryotes - 554 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G62950.3

Model type
Protein coding
Short Description
RNA polymerase II, Rpb4, core protein
Computational Description
RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, catalytic activity, nucleotide binding; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1).
Link
InterPro Scan - TAIR