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Mutant Lines
GT15718

GT15718

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile (unconfirmed)

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT15718

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 125614 [Map]; Strand: w
  - AT4G00290.1 - [+] show detail - Mechanosensitive ion channel protein
    Distance: -23; Region: promoter
  - AT4G00300.1 - [+] show detail - fringe-related protein
    Distance: -895; Region: promoter
Flanking Genome Sequence: GT15718 - 3-prime edge
```
CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAAATAA 
GAAGCAGAGT TGACGAAATA AACCTGTGTC TTCTTCTTCT TCATCTTCTT 
TCCCTCTTTG CCAAGCAAAA TTTAGAATTC TTTCTTTATC TCTCAGCGAG 
AATTTTGGCT AAGAATCTAG TTATCTTCAT CTCACTCGAC G
```

5 prime edge [+] show sequence

Chromosome: 4; Position: 125674 [Map]; Strand: w
- AT4G00290.1 - [+] show detail - Mechanosensitive ion channel protein
  Distance: -83; Region: promoter
- AT4G00300.1 - [+] show detail - fringe-related protein
  Distance: -835; Region: promoter

TCCTACTTTA TCCCTGGTTC GGTAACATCG ACGTCGTTTT AGTCACCTTC 
AACTTCTGGG CCTTTTGGGC CTAATGATTC AAATTTGTTG GGCTTAATGC 
AAGTTTGATT AATTTGGTGC AAAACCTTAT TAAGAAACAC ACACACACAA 
AGTTGTGAAT TTGTGAATTT ACTTAACTAC GTACATATAT ATAATCATTA 
ATTAATCACG GTGTTTGTCA AATATATATG GTTACAAATT CAATATGTTT 
TGGACAAAAT AATATGTGCC TAAATCTGCT TATAAATGAC AAAATATATA 
CAACCACTAA AAATAGAAGA GATATTTATC ATGAATTGTA CTCCAATAAA 
AAAGGTATTG ACTTTAGACA AAGTATCATC CTAAGATGGA GTATTTTGCA 
AATACTTGGC TACAATAAAA AAAACTGATA GATTTGTGTG AAAAACGCTA 
TTTTCAGTTA TTAATTACTG TAATCATTAA TGTTGAAATG TCGTTTTCCA 
TCTTATGGTT TTATTCTTGT GGAGAATTAA TGTTCCAAAA ACAGCTTTGA 
CTCTAATAAA TTGGGAAATA TAAAAAGGAG ATTTCTTTCT AGATCCAAAA 
TTTTTTTTTA ACTAAATAAG ATTATTTT

AT4G00290.1

Model type: Protein coding
Short Description: Mechanosensitive ion channel protein
Computational Description: Mechanosensitive ion channel protein; INVOLVED IN: transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS, transmembrane-2 (InterPro:IPR011014), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00234.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00300.1

Model type: Protein coding
Short Description: fringe-related protein
Computational Description: fringe-related protein; CONTAINS InterPro DOMAIN/s: Malectin/receptor-like protein kinase (InterPro:IPR021720), Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT1G01570.1); Has 958 Blast hits to 946 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 87; Fungi - 151; Plants - 707; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link: InterPro Scan - TAIR