GT15496 - RIKEN Arabidopsis Genome Encyclopedia
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GT15496

CSHL Arabidopsis genetrap mutant lines

Original: GT15496

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15496

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16172103 [Map]; Strand: c
      • AT5G40410.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15496 - 3-prime edge
    CGACCGTTTT CATCCCTAGT TGGGCATGAG CCTGATCAAG CCACTTTTCT 
    GGCTGTTCTC CGTAGCTGTG AAGACATGGG TGTACTGAGA TTGGCGCAAG
    GAATTCATGG GCTAATCATG TTTGGTGGGT TCAGTGGAAA CAAGTGTATA
    ACGACAGCGT TATTAGACTT GTATTCGAAA CTTGGGAGGT TGGAGGATTC
    GTCTACGGTT TTTCATGAGA TTACTTCTCC AGATAGTATG GCGTGGACTG
    CAATGCTTGC TGCTTATGCC ACTCATGGGT TTGGAAGAGA TGCAATCAAG
    CATTTTGAGC TCATGGTTCA CTATGGTATT AGTCCTGATC ATGTAACCTT
    CACTCACTTG TTAAATGCTT GTCGTCATTC TGGTCTTGTA GAAGAAGGGA
    AGCATTATTT CCAAACAATG TCTAAAAGAT ACAGGATTGA CCCGAGGTTA
    GATCACTATT CATGTATGGT TGATCTACTG GGTCGATCCG GGCTTCTCCA
    AGATGCTTAT GGATTGATCA AACAAATGCC AATGGAGCCT AGTTCTGGTG
    TATGGGGCAG CTTTGCTTGG TGCTTGTAGG GTTTACAAAA GATACACAAC
    T
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16172015 [Map]; Strand: c
      • AT5G40410.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15496 - 5-prime edge
    CTTTCTCCCT GTGCCCACCC TTCTGCTCAT GTTAAAGTAA GCCAGACCTT 
    TTTCAGCTAA ACCGTTCTGC AAGTGAATCA CAATCATCGT ATTCCAAGAA
    ACCAAATTCT TTATACTCAA ATCCTCAAAC AATTTGCAGG ATGAAGTCAA
    ATCTCCAGTC TTTCCATACC AATTGATAAA AGCATTCACA ACTTTAACTT
    CCTCAAGTAC ACCAAATTTC ATCACCAACC CATGAATACA ACGTCCTTCT
    TCCTTACTTC CCCCGTAAAC ACAAGCCGAG ATCATCGACA AAAACGTAAC
    TTCATTAGGT CTAAAACCCA CCTCAGATAT CATCATCCTA GACAACACCT
    CAAAACATTT CCCCAAATAA CCTCTCCCTG AATACCCAGA TATTAAAGAG
    TTCCAAGAGA CTAAATCTCT CTCAGGCATT TCATCGAACA GCTTCTCTGC
    ACAAACATCA TGACCCAATC TCAAGTAACA ACCAACAAGC TGGTCCCCAA
    TAAATCCATG GCGGTAACTC ACACTCTTCA CTACTTTACA ATGAAGCAAA
    CGACACAGTT CAATGGAGAC ACAAGACTTT ACAGCAGCTA TAAGTGATGA
    AACATTTGCA TCTAAACTAT GAACAAAACT AGATTGGCTC AAAAATCTCC
    GACGATATAA AAATCTGAAC TTTGAACATG AATACACATT TGCTTTGATC
    ATCTCTCATT GTTATTATCT TTCTCTCCTC AAACCAAACT TAAAAGCCTT
    CTCCAATTAG TAATTACCAT TTTTACTATT AACGCCAATT AATTACTGGC
    TTCAAAAAAA AAATACTATT GG

AT5G40410.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 34649 Blast hits to 13101 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 65; Fungi - 34; Plants - 34234; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).
Link
InterPro Scan - TAIR