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GT14643

CSHL Arabidopsis genetrap mutant lines

Original: GT14643

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14643

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5040117 [Map]; Strand: w
      • AT4G08108.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT14643 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC ATGCACTATG 
    GAGTCAAAGG GTCAAGAGAG TTAAATTTGG TTTTTACCAA AGGATCCAAT 
    CTGGAAGTCC AGGGATTTTG TGACTCTGAT CATGTTGCAG ATCAAGATAA 
    AAGAAGGTCC ATAAGCGGAT ACGTTTTCAC TGTTGGTGGT AATACTGTGA 
    GCTGGAAGTC TAGTTTACAG CATGTTGTAG CATTGTCTTC TACACAGATT 
    GAGTTTATTG CACTCACTGA AAATGTGAAG GAAGCAATTT GGATTAGAGG 
    ATTGCTAGAT GATATGGGAT TGAAGCCAAA GCCAACAATA GTGTGGTGTG 
    ACTCTCAATC ACTTATTTGT CTGTCAAAGA ATAATGCTTT TCATGATCCA 
    ACAAAGCATG TGGAAGTAAA GTTCTATATC AGCAAAGACA TTATTAATAC 
    TGGAGGGGTA AAGGTTCGAA AGATTCACAC GTTTGAGAAT TCTGCAGATA 
    TGCTTACAAA ATGCATCCCA CTGAAGAAGT TTGAGAAGGC TTTAGATTTT 
    CTAAAACTAC TCAGCTAAGA CGTTAAGTCG CATCACCGGA GGTTAAGTTC 
    ATGAAGTGCA ATTTACAAGA AGATGATGAA AGATAGATTT ACGAGAAGCA 
    GAAGAGGAAA ACCATTGATT TTTTTGCATT TTATGTATAA ACATTTATTT 
    TTCTTTGAAT ATAATTTAAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29681253 [Map]; Strand: c
      • AT1G78930.1 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: -496; Region: promoter
      • AT1G78940.2 - [+] show detail - Protein kinase protein with adenine nucleotide alpha hydrolases-like domain
        Distance: 0; Region: exon9 (CDS)
      • AT1G78940.1 - [+] show detail - Protein kinase protein with adenine nucleotide alpha hydrolases-like domain
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: GT14643 - 5-prime edge 
    CCTACTTTCT CCCTGGTCTA CTCGTAAAAC TGCTCACTAA ACCCGTGGAA 
    CAAGCAACAT TCGGCCTAGT ACCAATCATG GCATACATCA CACTACCCAC 
    ATCACTTGAA TATGGAATCA CTCCTGGATC CACACTTCCA ATCTCATCAA 
    TGAGGGATGT CAATTTAAAA TGAGCACCCA TTGGAGTACT CACAACCTTA 
    GCATCAGCCA TTCTAAATCT CTGTATCACT TTGTCCAAAT ATCTAGTTTG 
    TGACAAGTGT AGAGTACCCT ACTTTCTTCA TCTACACTCG ACAACNCNAA 
    CACTCAATTT GCAGGAGTTA TAAACAAAAG CAGAGCAAGT TTCTTTGCTG 
    ATTAGTGTAT AGCATTAGAG GAATTTGGTA TTCTGTTAAA TAATCAGTTA 
    TGTAACCGCC TTTTTGTTAG GCCCATAACG GTTTTGAACA ATCAATACTG 
    TATTTATTAA AGAATCGATA ATGTAAGAGC CCATATAAAT AGGCCCAATG 
    GCTCAGACCG GTTTGACCCA ACCGGGATTT TGGTTTTATT AATTAATTTG 
    GTTTTGAAAA TCAAAATGGT TAAACCCATA GCTACAGATA AACCCTGCAA 
    CAGCTTCTTC TTCTTCCTCT TGATGTGGGC AGAAGCAAAG TAGCGACCTT 
    TGTCTTCTTC TCC

AT1G78930.1

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1485 Blast hits to 916 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 0; Plants - 1282; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78940.1

Model type
Protein coding
Short Description
Protein kinase protein with adenine nucleotide alpha hydrolases-like domain
Computational Description
Protein kinase protein with adenine nucleotide alpha hydrolases-like domain; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (TAIR:AT1G16760.1); Has 112231 Blast hits to 110580 proteins in 4381 species: Archae - 118; Bacteria - 13767; Metazoa - 40808; Fungi - 9212; Plants - 31998; Viruses - 225; Other Eukaryotes - 16103 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78940.2

Model type
Protein coding
Short Description
Protein kinase protein with adenine nucleotide alpha hydrolases-like domain
Computational Description
Protein kinase protein with adenine nucleotide alpha hydrolases-like domain; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, response to stress; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (TAIR:AT1G16760.1).
Link
InterPro Scan - TAIR

AT4G08108.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR