F30138

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30138

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
T2  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30138

Determination of introduced cDNA(s)

  • RAFL05-09-N08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-09-N08 - Resource: pda01083

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-09-N08 - full reading 
    CTCTCTTTTT GCTATTATAA AGAAAAAGAT TCATTCTCCC ACCATTGAGG 
    TTTAACTTAT ACAAACAGAT CTTTTTGAAA TTGGATTCAT CTAAGAAGCA 
    GACTCTGTTT TCATGGCTGT TTACAATACC AAACTCTGTT TGGCCTCTGT 
    TTTCTTGCTC TTAGGGCTTC TCTTGGCTTT TGACTTGAAG GGTATAGAAG 
    CAGAAAGTCT TACCAAACAG AAACTGGACT CGAAGATACT TCAGGATGAG 
    ATTGTGAAGA AAGTCAACGA AAACCCAAAC GCTGGATGGA AAGCTGCTAT 
    AAATGATCGA TTTTCAAACG CCACTGTTGC AGAGTTTAAG CGTCTTCTCG 
    GTGTTAAACC AACACCAAAG AAGCATTTCT TAGGTGTTCC TATTGTGAGC 
    CATGATCCAT CTTTGAAGCT ACCTAAAGCT TTTGATGCTA GAACTGCTTG 
    GCCACAGTGC ACTAGTATTG GAAACATCTT AGATCAGGGA CATTGTGGTT 
    CTTGCTGGGC ATTTGGTGCT GTTGAATCAC TATCAGATAG ATTCTGTATC 
    CAATTTGGCA TGAACATTTC TTTATCAGTA AATGATCTCC TAGCTTGTTG 
    TGGATTCCGT TGTGGTGATG GTTGTGACGG TGGCTATCCA ATTGCTGCTT 
    GGCAATACTT TTCGTATAGC GGTGTTGTCA CAGAAGAGTG TGATCCATAC 
    TTTGATAATA CCGGATGCTC TCACCCGGGT TGCGAACCGG CATATCCTAC 
    ACCGAAATGT TCGAGGAAAT GCGTTAGCGA CAACAAACTA TGGAGCGAGT 
    CGAAGCATTA CAGTGTTAGT ACATACACTG TGAAATCTAA TCCACAAGAT 
    ATCATGGCAG AGGTTTATAA GAATGGACCT GTTGAAGTCT CTTTTACCGT 
    TTATGAGGAT TTTGCTCATT ACAAATCTGG AGTCTATAAG CACATAACAG 
    GTTCTAACAT TGGAGGTCAT GCTGTTAAAC TTATTGGTTG GGGAACTAGC 
    AGTGAAGGAG AAGATTATTG GTTGATGGCA AATCAATGGA ACAGAGGCTG 
    GGGTGATGAT GGTTATTTCA TGATAAGGAG AGGAACTAAT GAATGTGGAA 
    TTGAAGATGA ACCAGTAGCT GGTTTGCCTT CAAGCAAGAA TGTGTTTAGG 
    GTTGATACCG GTTCGAATGA TCTTCCGGTT GCATCGGTTT AAGATCAAAG 
    ATGGAAATGT TGCATCGGTT TAATATCAAA GATGAAAAGT TGTTTGTAAG 
    ATATATATGT TATGGTTGTT GTTTCCAGTA AAAGATTCCG GTGACTAGAA 
    ATTGTTTTCT GGTTGGCTGT GAAAATGTTA TACAAATAAA CACTTCAACT 
    TAAGCAATAT AATATCATTT CTACTAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT4G01610.1 [+] show detail - Cysteine proteinases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidase C1A, papain C-terminal 4e-66
    HMMPfam Peptidase C1A, propeptide 7.3e-15
    HMMPanther Peptidase C1A, cathepsin B 3.7e-198
    HMMPanther Peptidase C1A, papain 3.7e-198
    Gene3D no description 1.4e-90
    PatternScan Peptidase, cysteine peptidase active site 0
    PatternScan Peptidase, cysteine peptidase active site 0
    FPrintScan Peptidase C1A, papain C-terminal 4.9e-08
    FPrintScan Peptidase C1A, papain C-terminal 4.9e-08
    FPrintScan Peptidase C1A, papain C-terminal 4.9e-08
    HMMSmart Peptidase C1A, papain C-terminal 1.3e-87
    superfamily Cysteine proteinases 3.6e-102

    See the detailed result >

    AT4G01610.1

    Model type
    Protein coding
    Short Description
    Cysteine proteinases superfamily protein
    Computational Description
    Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02305.1); Has 7486 Blast hits to 7443 proteins in 692 species: Archae - 63; Bacteria - 158; Metazoa - 3254; Fungi - 4; Plants - 1745; Viruses - 146; Other Eukaryotes - 2116 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR