F30135

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30135

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
fruit (PO:0009001)
  • decreased thickness (PATO:0000592)
    (Silique::Shape::thin)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30135

Determination of introduced cDNA(s)

  • RAFL09-16-D24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-16-D24 - Resource: pda01889

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-16-D24 - full reading 
    GCAAAGAACA AACCAGTGAA GGAAAAATGG AGATATGGTT ACTTATCTTG 
    GGCTCTCTCT TCCTCTCTCT CCTTCTCAAT CTCCTCTTCT TTCGCCTCCG 
    TGACTCCTCC TCTCTTCCGT TACCACCTGA CCCTAACTAT TTCCCTTTCA 
    TTGGAACCAT CCAATGGCTC CGGCAAGGCT TAGGTGGACT CAACAACTAT 
    CTCCGCTCCG TCCACCACCG TCTCGGTCCC ATCATCACCC TTCGCATCAC 
    TTCCCGCCCC TCTATATTCG TCGCCGATCG TTCTCTTGCT CACCAGGCTC 
    TCGTTTTGAA CGGTGCCGTT TTCGCCGATC GTCCACCGGC AGCTCCGATC 
    AGTAAGATTA TTTCGAGTAA CCAACATAAC ATCAGCTCTT GTTTATATGG 
    AGCCACGTGG CGTCTTCTTC GCCGGAATCT CACTTCTGAG ATTCTTCACC 
    CCTCGCGCGT GAGATCTTAC TCTCACGCGC GGCGTTGGGT TCTTGAGATT 
    CTTTTTGATC GATTTGGTAA AAACAGAGGA GAAGAACCGA TTGTTGTTGT 
    TGATCATCTT CACTATGCGA TGTTTGCGCT TCTTGTTCTC ATGTGTTTTG 
    GAGATAAGCT TGATGAGAAG CAAATCAAAC AAGTGGAATA TGTTCAGAGA 
    CGACAGCTTC TTGGCTTCTC GAGATTCAAT ATTCTCAATC TCTGGCCTAA 
    GTTTACTAAA TTGATTTTGC GAAAGAGATG GGAAGAGTTT TTCCAGATGC 
    GGAGAGAGCA GCATGACGTT TTGCTTCCGT TGATTCGTGC TCGGAGAAAG 
    ATTGTTGAAG AGAGAAAGAA TAGATCATCA GAGGAAGAAG AAGACAACAA 
    AGAGTATGTA CAATCATACG TTGATACTCT GCTTGAGCTG GAGCTTCCAG 
    ATGAGAAGAG GAAGCTGAAC GAGGATGAGA TTGTGAGTTT GTGTTCGGAG 
    TTTCTCAACG GTGGGACTGA TACAACGGCC ACCGCGTTGC AATGGATCAT 
    GGCGAACTTG GTGAAAAACC CGGATATTCA GAAGAGGTTA TACGAGGAGA 
    TCAAAAGCGT AGTTGGGGAA GAAGCAAATG AAGTGGAGGA AGAAGACGCG 
    CAAAAGATGC CGTATCTAGA GGCAGTGGTG ATGGAGGGTC TCCGGAGACA 
    TCCTCCGGGA CATTTTGTGC TCCCCCACAG TGTCACTGAG GACACTGTGT 
    TAGGAGGATA CAAAGTGCCG AAGAATGGGA CAATTAATTT CATGGTGGCA 
    GAGATAGGGA GGGATCCAAA AGTGTGGGAG GAACCAATGG CGTTTAAGCC 
    AGAGAGGTTT ATGGAAGAAG CGGTGGACAT AACCGGAAGC AGAGGGATAA 
    AGATGATGCC GTTCGGAGCG GGTAGAAGGA TTTGTCCAGG GATTGGGCTA 
    GCGATGCTGC ATCTGGAGTA CTATGTGGCG AATATGGTGA GGGAGTTTGA 
    CTGGAAGGAG GTCCAAGGTC ATGAAGTGGA CTTGACGGAG AAGCTCGAGT 
    TTACCGTAGT CATGAAGCAT CCGCTTAAGG CCCTTGCTGT TCCTAGGAGA 
    AGTCACTAGT TGTCTACTTC TTAAACTTCA GTTTAGTATT CACCAAAGAC 
    TAGGTGATGT ATGAAGAATT GAAGTTATGG GCATTTTGTT AGCTGAAGTC 
    AACTATGGAA CTATCTTTTT TATTAAAGTA CATTTTGTAC CTTGGAATAA 
    ATGATAGAAA CAACAATCCT TTTATTTTGT ATTAAAAGGA ATCTTTTATG 
    ACGAGTGTTT TTACAAGAAA GGTACATAGG TCTAGAAAAG TGTGGGATTT 
    CTAGTGTTTA GTGACTAGAT GATTTAGAAA AGTGTGGGAT TTTGATGGTT 
    GTTGATACTT TTGTTGGGAG AAATCGAAAG AGTAAAAGCC AAAAAAAAAA 
    AAAAA

    Gene models with high sequence identity

    1. AT1G64950.1 [+] show detail - cytochrome P450, family 89, subfamily A, polypeptide 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    superfamily Cytochrome P450 2.7e-118
    Gene3D Cytochrome P450 1.7e-111
    PatternScan Cytochrome P450, conserved site 0
    HMMPanther CYTOCHROME P450 SUBFAMILY 79A 0
    HMMPanther Cytochrome P450 0
    FPrintScan Cytochrome P450, E-class, group I 1.4e-40
    FPrintScan Cytochrome P450, E-class, group I 1.4e-40
    FPrintScan Cytochrome P450, E-class, group I 1.4e-40
    FPrintScan Cytochrome P450, E-class, group I 1.4e-40
    FPrintScan Cytochrome P450, E-class, group I 1.4e-40
    FPrintScan Cytochrome P450, E-class, group I 1.4e-40
    FPrintScan Cytochrome P450, E-class, group I 1.4e-40
    FPrintScan Cytochrome P450, E-class, group I 1.4e-40
    FPrintScan Cytochrome P450, E-class, group I 1.4e-40
    FPrintScan Cytochrome P450, C-terminal 2.6e-11
    FPrintScan Cytochrome P450, C-terminal 2.6e-11
    FPrintScan Cytochrome P450, C-terminal 2.6e-11
    FPrintScan Cytochrome P450, C-terminal 2.6e-11
    HMMPfam Cytochrome P450 5.4e-98

    See the detailed result >

    AT1G64950.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 89, subfamily A, polypeptide 5
    Curator Summary
    member of CYP89A
    Computational Description
    "cytochrome P450, family 89, subfamily A, polypeptide 5" (CYP89A5); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 87, subfamily A, polypeptide 6 (TAIR:AT1G64940.1); Has 33837 Blast hits to 33688 proteins in 1718 species: Archae - 63; Bacteria - 4127; Metazoa - 11783; Fungi - 7185; Plants - 9256; Viruses - 3; Other Eukaryotes - 1420 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR