F28733

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic)
	stem (PO:0009047)	present in greater numbers in organism (PATO:0000470) (Stem::Number::many)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28733

Determination of introduced cDNA(s)

RAFL05-10-N19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-10-N19 - Resource: pda02495

full reading [+] show sequence

GACGCGATTG GGTAAGCGAT GCACATCGTC TTCTCTGTCG ATGATTTGAC 
CGAATCCTTC TGGCCTGTTC CCGCTCCGGC GCCGTCGCCG GGATCGTCAT 
CGACTCCGTC ACCGACGCAG AACGTGGCGG ATGGGATGAC TCGAAGTCAA 
TCGGAGTGGG CGTTCCACAG GCTTATCAAT GAGTTGTCTG GTTCCGATTC 
GAGCCCTACG ACTAACACAA TCGAGAGATC ACCTCCACCG GTTCAGTCTC 
TTTCGAGATT AGAAGAAACC GTTGACGAAA CCGAAGATGT TGTTGAGATT 
CAGAAACCGC AGAATCATCG ACGGCTCCCT GTTGATGATC AAGGGAAGAA 
TCGGAATCGT GCTCCGTCGT CTGATCCGGT TGATTCTTCA GCTCCTGTTG 
TTGTTGATCC TAATCAGTAT CATGCGATTC TTAAGAGCAA GCTCGAGCTT 
GCTTGCGCTG CTGTTGCTCG TCGTGTGGGA ACTGTGAAAC CGGAAGATTC 
GAGTGCTTCA GCTAGCAATC AAAAACAAGC TCAAGGCTCC ATTGTGGCAC 
AAACCTCACC TGGTGCTTCA TCTGTTAGAT TTTCTCCCAC AACAAGCACG 
CAAAAGAAAC CTGATGTTCC AGCCAGACAA ACTAGTATTT CATCACGAGA 
TGATTCTGAT GACGATGATC TTGATGGAGA CGCAGATAAT GGAGATCCTA 
CTGATGTGAA GCGTGCTAGG AGGATGCTCT CAAACCGAGA ATCCGCTAGG 
CGCTCTAGGA GAAGAAAGCA AGAACAAATG AATGAATTTG ATACACAGGC 
CAATTAAGAG CCGAGCATTC AACTTTAATT AATCGTCTTA GTGACATGAA 
TCATAAGTAT GATGCAGCTG CTGTTGACAA CAGAATTCTA AGAGCTGATA 
TCGAAACTTT GAGAACAAAG GTTAAGATGG CAGAGGAAAC TGTGAAAAGA 
GTGACAGGAG TGAACCCTTT GCATTGGTCA AGACCAAACA TGGGCATACC 
ATTCAGCAAC ACACCGAGTG CTTCCTCTAG TATTCCGCCA AACTCTAACC 
ACATTTTGAA ACCAGCAAAT TCAAGTACCA ACACCAGTGC TGGTTTAGCA 
CAAAATCAGA GAGTGGAGAC GGCAAATTTC TTGCCGGAAC AGGTGAACCG 
TGAAGGCATG CAGAATCCAT TTGCTCCTGA TTCTAATCTG TATGAAACCC 
TACCCCATTG GAATCACAAG CATTAACCAG AAAAAGAGTC ATTGGTTTTG 
TGATTTTGAT TGAGGTAACT ATTGTCTGTA TTTTTATTTA CTGTATGACT 
CAGCGACGGT AAACTCTTAA TATTATATAT ATGATTGGAC ATGATGGAT

Gene models with high sequence identity

AT3G54620.1 [+] show detail - basic leucine zipper 25
E-value: 0; Score: 99.70

InterPro Scan Digest

Program	Description	E-value
PatternScan	Basic-leucine zipper (bZIP) transcription factor	0
Coil	coiled-coil	0
Coil	coiled-coil	0
ProfileScan	Basic-leucine zipper (bZIP) transcription factor	8.864
HMMPfam	bZIP transcription factor, bZIP-1	3.6e-08
HMMPfam	Basic leucine-zipper, C-terminal	1.3e-18

See the detailed result >

AT3G54620.1

Model type: Protein coding
Short Description: basic leucine zipper 25
Curator Summary: bZIP transcription factor-like protein mRNA
Computational Description: basic leucine zipper 25 (BZIP25); FUNCTIONS IN: protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), Basic leucine-zipper, C-terminal (InterPro:IPR020983); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT4G02640.2); Has 2261 Blast hits to 2259 proteins in 207 species: Archae - 2; Bacteria - 16; Metazoa - 141; Fungi - 138; Plants - 1903; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Link: InterPro Scan - TAIR