F28621

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28621

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased width (PATO:0000600)
    (Cauline leaf::Shape::wide)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28621

Determination of introduced cDNA(s)

  • RAFL09-12-B06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-12-B06 - Resource: pda01622

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-12-B06 - full reading
    AAGTCCTTGT CCTTCCTTCC TCAATCAAAC AACACCTTCT TTAATCCAGA 
    ACAAAAAAAA ACAAACAGAA GAAAAAAAAA AAAAAAAACT ACAAAAAAAA
    AATCTCTGCC CGCTTCTCCG TTCTCGGGGT TGCGTCAAAA TTGCACCAAA
    TTAATCAAAA CCTACCCAGA AATCATTTTT GGTCACAGGG GATAGGCGGG
    CAGATTTAAA TTTTCTTCTT TTGTTCTTCT GTTTGAATTT GTATTGATTC
    GTGAAATTGT GTTTGTTTGA TGGGGTTTTT GGTGGATACG CAAAAGGAAG
    GAGGTGGACA TTCATGGGGT TACGTTAGAA GTTTGGTTAG AAGGAAACAA
    GTCGACTCTG CTAATGGCCA ATCTCATGGT CACCAACTTG CTAGAGCCCT
    CACTGTTCCT CATCTCGTTG CAATTGGTGT TGGAGCAACA ATAGGAGCTG
    GAGTTTATAT TCTTGTAGGA ACAGTTGCGA GAGAGCATTC AGGACCTTCT
    CTTGCTTTGT CTTTTCTTAT TGCTGGAATT GCTGCTGGTC TTTCTGCGTT
    TTGTTATGCT GAACTCTCTA GTCGTTGCCC TTCAGCTGGG AGTGCGTATC
    ACTATTCTTA CATTTGTGTT GGTGAAGGTG TTGCGTGGAT AATCGGTTGG
    GCGTTGATTC TGGAGTATAC CATTGGTGGC TCAGCTGTTG CCCGTGGCAT
    ATCCCCTAAT CTGGCACTGA TTTTTGGTGG TGAAGATGGT TTGCCTGCAA
    TTTTAGCGCG CCACCAGATC CCAGGCCTTG ATATTGTTGT TGATCCATGT
    GCTGCTATTC TTGTGTTTGT TGTAACTGGC CTTTTGTGCA TGGGAATAAA
    GGAGAGCACA TTTGCTCAGG GAATTGTAAC TGCAGTCAAT GTGTGTGTCC
    TGTTATTTGT CATAGTAGCT GGCAGTTATC TCGGCTTCAA GACAGGTTGG
    CCTGGTTATG AACTTCCAAC AGGGTTCTTT CCATTCGGAG TAGATGGAAT
    GTTTGCTGGT TCTGCTACAG TCTTTTTTGC ATTCATTGGG TTTGATTCGG
    TTGCAAGTAC CGCAGAGGAG GTGAGAAATC CCCAACGGGA TTTACCGATT
    GGTATTGGTC TTGCTCTCTT GTTATGTTGT TCTCTCTACA TGATGGTCTC
    CATAGTTATT GTTGGTTTAA TTCCTTACTA TGCAATGGAT CCCGACACCC
    CGATATCCTC TGCATTCGCT AGTCATGACA TGCAATGGGC TGTATACTTA
    ATAACTTTAG GAGCTGTCAT GGCACTCTGC TCAGCTTTAA TGGGTGCCCT
    TCTCCCTCAG CCACGAATTC TGATGGCAAT GGCTAGGGAT GGTCTGCTCC
    CTTCTATTTT TTCAGACATT AATAAACGCA CACAGGTTCC GGTTAAAGCA
    ACAGTGGCAA CTGGGTTGTG TGCTGCAACC TTAGCGTTCT TTATGGATGT
    TTCACAGCTT GCAGGGATGG TGAGTGTTGG GACACTTCTG GCATTTACAA
    TGGTGGCAAT ATCAGTGTTG ATACTAAGAT ATGTTCCTCC AGATGAGCAA
    CCTCTTCCGT CATCTCTTCA AGAGAGAATT GATTCTGTTT CCTTTATATG
    TGGTGAAACA ACGTCATCCG GTCATGTTGG TACTTCCGAT AGCAGTCACC
    AGCCTTTAAT AGTTAATAAT GATGCTTTGG TCGATGTCCC ACTTATCAAG
    AATCAAGAAG CTCTAGGGTG TTTGGTTCTC AGCGAGGAAA CCAGAAGGAT
    TGTCGCTGGA TGGAGCATTA TGTTCACATG TGTTGGGGCC TTCCTTTTAA
    GTTATGCGGC ATCAAGCCTG AGCTTCCCAG GGCTTATTAG ATATCCGTTG
    TGTGGTGTTG GTGGATGTCT CCTCCTTGCT GGTTTGATTG CTCTGAGTTC
    CATAGATCAG GATGATGCGA GACACACTTT TGGACATTCT GGAGGTTACA
    TGTGCCCGTT TGTTCCCCTC CTACCTATCA TCTGCATTCT CATCAACATG
    TACCTTTTGG TTAACCTTGG ATCTGCGACA TGGGCTCGTG TATCGGTGTG
    GCTGCTTATA GGAGTGATTG TGTATGTTTT CTATGGTCGG AAAAACAGTT
    CGCTTGCCAA TGCAGTTTAC GTAACTACAG CTCATGCGGA GGAGATATAT
    CGCGAACATG AAGGTTCTTT GGCATAGTCT GAGAAAGCAG CATCTCTTTT
    GTTATATATG TAACACAAAT CTGTATTATC TTTATCTGGA TGTAACAGCA
    AGAGTGGCAC TATCTATTTG TTTGCAAAAA GATCTGTCCA CGGCCTTTGT
    AAATAATATA TATCATCATC AATTCGT

    Gene models with high sequence identity

    1. AT1G58030.1 [+] show detail - cationic amino acid transporter 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Amino acid permease domain 7e-37
    HMMPanther Cationic amino acid transporter 1.2e-264
    HMMPanther Amino acid/polyamine transporter I 1.2e-264
    HMMPIR Amino acid/polyamine transporter I 6.2e-72

    See the detailed result >

    AT1G58030.1

    Model type
    Protein coding
    Short Description
    cationic amino acid transporter 2
    Curator Summary
    Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Localized to the tonoplast.
    Computational Description
    cationic amino acid transporter 2 (CAT2); FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: plant-type vacuole membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 3 (TAIR:AT5G36940.1); Has 37076 Blast hits to 34712 proteins in 2307 species: Archae - 552; Bacteria - 29543; Metazoa - 2357; Fungi - 2838; Plants - 508; Viruses - 0; Other Eukaryotes - 1278 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR