F28613

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28613

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28613

Determination of introduced cDNA(s)

  • RAFL05-15-H13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-H13 - Resource: pdz87492

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-15-H13 - 5 prime EST 
    GAAATTCATC AAACCCATTT CTATTCCAAC TCCCAAAAAT GGCGATTCGT 
    CTTCCTCTGA TCTGTCTTCT TGGTTCATTC ATGGTAGTGG CGATTGCGGC 
    TGATTTAACA CCGGAGCGTT ATTGGAGCAC TGCTTTACCA AACACTCCCA 
    TTCCCAACTC TCTCCATAAT CTTTTGACTT TCGGTTAAAA TATTTTACTT 
    TGCCATTCCC AACTCTCTCA CTTATTTTTG TTCTTAATGT TAGAAATACA 
    TGTTTGTTCT GAATTTATAT TATGAATTTA TATTATGGTT TTCACTAGTG 
    TTAGAAATAC ATGTTTGCCA TTCCATTCCC AACTCTCTCC ATAATTAACT 
    GTTTTTTTTC TTTCTTTTCT TTAAAACACA CAAAAAATAT TTATTTACAT 
    AAATGCAAAT AAAGATGTGT TTGACTTGTA TTATTACAAT TTCTTTTATA 
    TTTCAACATA TTTTTCTGAA TTTGTATGTA GCAAATAAAT GTATTCTTTT 
    TTAGTTGTTA ATAAAATAAA TGTTTCCTTA CCAAACTTTT TTTTTTTTGC 
    AGATTTTACC GACGAGAAAA GTACCAACGT CCAAGTAGGT AAAGGCGGAG 
    TAAACGTTAA CACCCATAAA GGTAAAACCG GTAGCGGAAC CGCCGTGAAC 
    GTTGGAAGGG AGGTGTACGC G

    Gene models with high sequence identity

    1. AT5G25610.1 [+] show detail - BURP domain-containing protein
      E-value: 1e-57; Score: 99.17

    AT5G25610.1

    Model type
    Protein coding
    Short Description
    BURP domain-containing protein
    Curator Summary
    responsive to dehydration 22 (RD22) mediated by ABA
    Computational Description
    RESPONSIVE TO DESSICATION 22 (RD22); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to desiccation, response to salt stress, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: unknown seed protein like 1 (TAIR:AT1G49320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR