F26831

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26831

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26831

Determination of introduced cDNA(s)

  • RAFL08-09-C07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-09-C07 - Resource: pda04520

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-09-C07 - full reading 
    AAAATCAATC AATCACTAAA ATTAGTCGTT AAACAAAAAG CTTGCGAAGA 
    AGAAGACGAA GAAAATGGCG GATTTGATTT TGAGTTCCTC CTCTGCACAA 
    TCCTCTCTCC TTCACGTCAG ACCTAATCAC TATCTACTCA ATACCTCCAC 
    TGCTTCACCG ATCCGAAGTG TCAGATTCCA AAATTCCAAC GGTTTTCATC 
    CTCTGGCGTT CGCATCTGGT CACCGACGAC TTCCTCTCGG TGCAGTAGTT 
    CCCTCTGACT CCACTAAGAC GATCACCAGT ACGATTACTG CTAACTGCGT 
    TGATTCGGGA GTCAAAGCTG TTGAAGTCGA GCCTACGATC GATTACGGAG 
    GTGGTGGTGG AATTGGAGGT GATAAATTTG GCGGCGGTGG TGGAGGCGGC 
    GATGGAAATG ACGACGGAGG GGAAGACGAT AAGGAGGAGA GTGACGGGAA 
    GAAGAGCACG CCTCTGTCTA TGTCGCAGAA GTTGACTCTT GGTTACGCTT 
    TTCTCGTCGG AGTTGGTGGG CTGATGGGTT ATCTGAAGAG CGGTAGCCAG 
    AAATCGTTGC TTGCAGGTGG ACTGTCAGCT GCTGTTCTGC TGTATGTCTT 
    CAGTCAGCTC CCAACAAAAC CTGTTCTTGC ATCAACCGTT GGTGTAGTGA 
    TGGCGGGTGC GTTAATGTAC GTAATGGGAA CCCGATACAT GCGTTCGAAG 
    AAGATATTTC CTGCTGGAGT TGTGTCGATC ATGTCTTTCA TTATGACCGG 
    AGGATACATA CACGGTATCA TGCGCAGCCT CCACTAAGCA GTAGCAAACA 
    CTCTCGAGTC TGTTACAAAA GTGTCTTGTC TCTGACCTTT TTCTTTCTTT 
    ATGTGTGTGT TTCACGGTGT ATAAAGCAGC TTTGCTACTT TGTTTTGTCT 
    GAACCATAAG AAAACTAGCA CCAAAACGTT CTAAAGGACT TTATGGATTA 
    AG

    Gene models with high sequence identity

    1. AT3G43520.1 [+] show detail - Transmembrane proteins 14C
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Uncharacterised protein family UPF0136, Transmembrane 8.8e-32
    HMMPfam Uncharacterised protein family UPF0136, Transmembrane 4.7e-22

    See the detailed result >

    AT3G43520.1

    Model type
    Protein coding
    Short Description
    Transmembrane proteins 14C
    Computational Description
    Transmembrane proteins 14C; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: Transmembrane proteins 14C (TAIR:AT2G26240.1); Has 541 Blast hits to 527 proteins in 134 species: Archae - 4; Bacteria - 94; Metazoa - 236; Fungi - 13; Plants - 153; Viruses - 7; Other Eukaryotes - 34 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR