F26733

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26733

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Adult plant::Flowering::late)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26733

Determination of introduced cDNA(s)

  • RAFL09-47-L06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-47-L06 - Resource: pda06346

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-47-L06 - full reading 
    AGAAGTGGTA TAGTCTAGGC CGATACATTT CACTATCTCT CTCTCTTTTG 
    TTTTTCCTCT TCTTCTTTTT TTCCATTTGA TTTCAAACTC TCACACAAAG 
    AGCTTCAGAT TTATAAGACC ATGATAATGG CTTTAAGACA AAGATTGGCA 
    AGAAGAAAAA ACTAAAGAGA AACGACCAAA ATCTCAAGCA AACAGTACTA 
    ACTTCTGTTG CAAAACAGAA GAAGATGTCT TGTAATAATG GAATGTCTTT 
    TTTCCCTTCA AATTTCATGA TCCAAACCTC TTACGAAGAT GATCATCCTC 
    ATCAATCTCC ATCTCTTGCT CCTCTTCTTC CTTCTTGCTC TCTACCTCAA 
    GATCTCCATG GATTTGCTTC GTTTCTAGGT AAGAGATCTC CAATGGAAGG 
    GTGTTGTGAT TTAGAAACAG GGAACAATAT GAATGGAGAA GAGGATTATT 
    CAGATGATGG GTCACAAATG GGAGAGAAGA AGAGGAGATT GAACATGGAA 
    CAAGTGAAGA CACTAGAGAA GAACTTTGAG CTTGGAAACA AACTTGAACC 
    AGAGAGGAAA ATGCAGCTAG CTCGTGCCTT AGGTTTGCAA CCAAGACAGA 
    TCGCGATTTG GTTTCAAAAT CGAAGAGCTC GTTGGAAAAC AAAGCAGCTA 
    GAGAAAGATT ATGATACTCT TAAACGACAG TTTGATACAC TTAAAGCTGA 
    AAATGATCTT CTTCAAACTC ATAATCAGAA ACTCCAAGCT GAGATAATGG 
    GATTAAAAAA CAGAGAACAA ACAGAATCAA TAAATCTAAA CAAAGAAACT 
    GAAGGATCTT GCAGTAACAG AAGTGATAAC AGTTCAGATA ATCTCAGACT 
    AGATATCTCA ACTGCGCCGC CATCAAACGA CAGTACATTA ACCGGTGGCC 
    ACCCACCGCC ACCACAGACA GTTGGTCGAC ACTTCTTCCC ACCGTCGCCA 
    GCCACCGCAA CGACAACTAC TACAACAATG CAGTTCTTTC AAAACTCATC 
    TTCAGGACAG AGTATGGTTA AAGAAGAGAA TAGTATCAGT AACATGTTCT 
    GTGCAATGGA TGACCATTCT GGTTTTTGGC CATGGCTTGA TCAGCAACAG 
    TACAATTGAA ATTGGTCTAC CTGTTTTTTT TGTTTTTGTT TTTAAAAAAA 
    TTTATATTTT TTTTTTTTGT ATTTGGAATT TTGATCAGAA GAACCCATGC 
    ATGTTTTCAA AAACTGGAAT CTATATCATT AGCTCACTTT C

    Gene models with high sequence identity

    1. AT1G69780.1 [+] show detail - Homeobox-leucine zipper protein family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 6.5e-20
    Gene3D Homeodomain-related 1e-14
    PatternScan Homeobox, conserved site 0
    ProfileScan Homeobox 17.216
    HMMPfam Leucine zipper, homeobox-associated 9.4e-18
    HMMPfam Homeobox 2.3e-15
    FPrintScan Helix-turn-helix motif, lambda-like repressor 1.4e-05
    FPrintScan Helix-turn-helix motif, lambda-like repressor 1.4e-05
    HMMPanther HOMEOBOX PROTEIN 2.7e-13
    HMMSmart Homeobox 1.8e-17
    Coil coiled-coil 0

    See the detailed result >

    AT1G69780.1

    Model type
    Protein coding
    Short Description
    Homeobox-leucine zipper protein family
    Curator Summary
    Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
    Computational Description
    ATHB13; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cotyledon morphogenesis, regulation of transcription, DNA-dependent, response to sucrose stimulus, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 23 (TAIR:AT1G26960.1); Has 11763 Blast hits to 11710 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9272; Fungi - 193; Plants - 2061; Viruses - 5; Other Eukaryotes - 232 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR