F26502

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Other)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)
T2
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	desaturated green (PATO:0001272) (Rosette leaf::Color::pale) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Other)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26502

Determination of introduced cDNA(s)

RAFL19-61-E05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-61-E05 - Resource: pda20191

full reading [+] show sequence

ACTCTCACCA GTCACAACCA AAAAAAAGAA AACACAAAAA CAAAGATTAT 
AATGGCTTCC TCAACCATGG CTTTGTCCTC CCCTGCCTTC GCCGGAAAGG 
CTGTGAAGCC TGCCGCATCA GATGTCCTCG GAAGCGGCCG TGTGACCATG 
AGGAAGACTG TCGCCAAGCC AAAGGGTCCA TCAGGCAGCC CATGGTACGG 
ATCTGACCGA GTCAAGTACT TGGGTCCATT CTCCGGCGAG CCCCCGAGCT 
ACCTTACCGG TGAGTTCCCC GGTGACTACG GATGGGACAC CGCTGGTCTA 
TCCGCCGACC CAGAGACCTT CGCCAGGAAC CGTGAGCTAG AAGTTATCCA 
CAGCAGATGG GCCATGCTCG GAGCCCTAGG CTGCGTTTTC CCTGAGCTAT 
TGGCTAGGAA CGGAGTGAAG TTCGGAGAAG CGGTTTGGTT CAAGGCCGGT 
TCACAGATCT TCAGCGACGG AGGATTGGAC TACTTGGGCA ACCCGAGCTT 
GGTCCACGCT CAGAGCATCT TAGCCATTTG GGCTACTCAA GTTATCCTCA 
TGGGAGCTGT TGAAGGCTAC AGAGTCGCCG GAGATGGTCC ATTGGGAGAA 
GCAGAGGACT TGCTTTACCC AGGTGGCAGC TTCGACCCAT TGGGCCTCGC 
TACTGACCCC GAGGCTTTCG CAGAGTTGAA GGTGAAGGAG CTCAAGAACG 
GAAGGTTGGC TATGTTCTCT ATGTTTGGAT TCTTCGTTCA AGCCATCGTC 
ACCGGAAAGG GACCTTTGGA GAACCTCGCC GACCATTTGG CCGACCCAGT 
CAACAACAAC GCTTGGGCCT TCGCCACCAA CTTCGTCCCC GGAAAGTGAG 
CGGCTGCTTA TTATGTGAAT GAGAGCAGAG AAAGAGAGTT TGTTTGTGGT 
CTATTCTATG TAAATTTGTG AACTTTCCTT TGTGGTATCT TTGTATAGAA 
ATCGAACCTC TTTTTCTCTA ACTGTGTTGG CGTTTTATCT GAAGACTCAA 
TTGAATTGAA ATATCCACTC TTGTAAAATT CATATGTTCT GAAAAAAAAA 
A

Gene models with high sequence identity

AT2G34420.1 [+] show detail - photosystem II light harvesting complex gene B1B2
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Chloroa_b-bind	9e-50
superfamily	Chlorophyll a-b binding protein	9.6e-81
HMMPanther	Chlorophyll A-B binding protein	2.4e-199

See the detailed result >

AT2G34420.1

Model type: Protein coding
Short Description: photosystem II light harvesting complex gene B1B2
Curator Summary: Photosystem II type I chlorophyll a/b-binding protein
Computational Description: photosystem II light harvesting complex gene B1B2 (LHB1B2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, guard cell, juvenile leaf, cultured cell, leaf; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2425 Blast hits to 2343 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2093; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).
Link: InterPro Scan - TAIR