F25106

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25106

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25106

Determination of introduced cDNA(s)

RAFL09-47-L06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-47-L06 - Resource: pda06346

full reading [+] show sequence

AGAAGTGGTA TAGTCTAGGC CGATACATTT CACTATCTCT CTCTCTTTTG 
TTTTTCCTCT TCTTCTTTTT TTCCATTTGA TTTCAAACTC TCACACAAAG 
AGCTTCAGAT TTATAAGACC ATGATAATGG CTTTAAGACA AAGATTGGCA 
AGAAGAAAAA ACTAAAGAGA AACGACCAAA ATCTCAAGCA AACAGTACTA 
ACTTCTGTTG CAAAACAGAA GAAGATGTCT TGTAATAATG GAATGTCTTT 
TTTCCCTTCA AATTTCATGA TCCAAACCTC TTACGAAGAT GATCATCCTC 
ATCAATCTCC ATCTCTTGCT CCTCTTCTTC CTTCTTGCTC TCTACCTCAA 
GATCTCCATG GATTTGCTTC GTTTCTAGGT AAGAGATCTC CAATGGAAGG 
GTGTTGTGAT TTAGAAACAG GGAACAATAT GAATGGAGAA GAGGATTATT 
CAGATGATGG GTCACAAATG GGAGAGAAGA AGAGGAGATT GAACATGGAA 
CAAGTGAAGA CACTAGAGAA GAACTTTGAG CTTGGAAACA AACTTGAACC 
AGAGAGGAAA ATGCAGCTAG CTCGTGCCTT AGGTTTGCAA CCAAGACAGA 
TCGCGATTTG GTTTCAAAAT CGAAGAGCTC GTTGGAAAAC AAAGCAGCTA 
GAGAAAGATT ATGATACTCT TAAACGACAG TTTGATACAC TTAAAGCTGA 
AAATGATCTT CTTCAAACTC ATAATCAGAA ACTCCAAGCT GAGATAATGG 
GATTAAAAAA CAGAGAACAA ACAGAATCAA TAAATCTAAA CAAAGAAACT 
GAAGGATCTT GCAGTAACAG AAGTGATAAC AGTTCAGATA ATCTCAGACT 
AGATATCTCA ACTGCGCCGC CATCAAACGA CAGTACATTA ACCGGTGGCC 
ACCCACCGCC ACCACAGACA GTTGGTCGAC ACTTCTTCCC ACCGTCGCCA 
GCCACCGCAA CGACAACTAC TACAACAATG CAGTTCTTTC AAAACTCATC 
TTCAGGACAG AGTATGGTTA AAGAAGAGAA TAGTATCAGT AACATGTTCT 
GTGCAATGGA TGACCATTCT GGTTTTTGGC CATGGCTTGA TCAGCAACAG 
TACAATTGAA ATTGGTCTAC CTGTTTTTTT TGTTTTTGTT TTTAAAAAAA 
TTTATATTTT TTTTTTTTGT ATTTGGAATT TTGATCAGAA GAACCCATGC 
ATGTTTTCAA AAACTGGAAT CTATATCATT AGCTCACTTT C

Gene models with high sequence identity

AT1G69780.1 [+] show detail - Homeobox-leucine zipper protein family
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Homeodomain-like	6.5e-20
Gene3D	Homeodomain-related	1e-14
PatternScan	Homeobox, conserved site	0
ProfileScan	Homeobox	17.216
HMMPfam	Leucine zipper, homeobox-associated	9.4e-18
HMMPfam	Homeobox	2.3e-15
FPrintScan	Helix-turn-helix motif, lambda-like repressor	1.4e-05
FPrintScan	Helix-turn-helix motif, lambda-like repressor	1.4e-05
HMMPanther	HOMEOBOX PROTEIN	2.7e-13
HMMSmart	Homeobox	1.8e-17
Coil	coiled-coil	0

See the detailed result >

AT1G69780.1

Model type: Protein coding
Short Description: Homeobox-leucine zipper protein family
Curator Summary: Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description: ATHB13; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cotyledon morphogenesis, regulation of transcription, DNA-dependent, response to sucrose stimulus, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 23 (TAIR:AT1G26960.1); Has 11763 Blast hits to 11710 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9272; Fungi - 193; Plants - 2061; Viruses - 5; Other Eukaryotes - 232 (source: NCBI BLink).
Link: InterPro Scan - TAIR