F23015

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23015

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23015

Determination of introduced cDNA(s)

  • RAFL09-81-E01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-81-E01 - Resource: pda09929

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-81-E01 - full reading 
    TGAAAGAAGA AGATCTTACA TACGAAGATC ACTCTCTGAT TCACTCTGAG 
    AGACAAACTG GTTTACTTTG GTTCTGTTTG ACAAAAGGAG ACATGCAAAA 
    ATAAATCTCT ATCCCTTGTT TTTCTTCTTC GCTTCATCGA TTACTCAAAG 
    AGGTTGTTGG TTGTGAGAAT AATTAGCTTG TTAAGGAAGA CGTTATGATG 
    CATCAGATGT TGAATAAGAA AGATTCAGCT ACTCATTCCA CTTTGCCATA 
    CCTTAATACT AGCATCTCTT GGGGAGTGGT TCCAACTGAT TCCGTTGCTA 
    ATCGTCGCGG TTCTGCTGAA TCACTAAGCT TGAAGGTTGA TTCAAGACCT 
    GGGCATATAC AAACTACAAA GCAAATCAGT TTTCAGGACC AAGATTCATC 
    TTCAACACAG TCCACTGGTC AATCTTATAC TGAAGTTGCT AGTAGTGGTG 
    ATGATAATCC TTCCAGACAA ATCTCCTTTT CGGCTAAATC AGGATCTGAA 
    ATAACTCAAC GGAAGGGGTT TGCAAGTAAT CCTAAACAAG GCTCGATGAC 
    TGGATTTCCG AATATTCACT TTGCTCCTGC ACAGGCTAAT TTCTCATTTC 
    ACTATGCTGA TCCACATTAT GGTGGTTTAT TAGCTGCAAC TTACCTACCA 
    CAGGCACCAA CATGCAATCC TCAAATGGTG AGTATGATTC CTGGTCGTGT 
    TCCTTTACCA GCAGAGCTCA CAGAAACTGA TCCAGTCTTT GTCAATGCGA 
    AGCAATACCA CGCAATTATG AGGAGGAGAC AGCAACGTGC TAAGCTTGAG 
    GCTCAAAACA AACTAATCAG AGCCCGTAAG CCCTATCTTC ATGAGTCTCG 
    ACATGTTCAT GCTCTTAAAA GGCCAAGAGG ATCTGGTGGA AGATTCCTAA 
    ACACCAAAAA ACTTCTTCAA GAATCCGAAC AGGCTGCTGC TAGAGAACAA 
    GAACAGGACA AGTTAGGCCA ACAGGTAAAC AGAAAGACCA ACATGTCTAG 
    ATTCGAAGCT CATATGCTGC AGAACAACAA AGACCGCAGC TCAACCACTT 
    CTGGCTCAGA CATCACCTCT GTTTCCGACG GTGCTGATAT CTTTGGACAC 
    ACTGAATTCC AGTTTTCAGG TTTCCCAACT CCGATAAACC GAGCCATGCT 
    TGTTCATGGT CAGTCTAATG ACATGCATGG AGGTGGAGAC ATGCACCATT 
    TCTCTGTCCA TATCTGAGAC AGTGGATCTT GGTGCTGTGT TCATGTTCCC 
    ACCAAGAAGG GGAAGTCATC CTTGGCTACT ACTAGTTCTT TCGCTTGTTG 
    TAACTTCAGT GTTTTTATTT CATATTATGT CTGTGTTAGA CATCACAAGA 
    ACGACCAAGA TCTTCACTTT GAAACACTCT ATTACCTTTT CATCTTCTGT 
    TACCATGGAT CTCTTGTCTA AACTAGTGAT ATGATTCTTC TGATAAACTT 
    T

    Gene models with high sequence identity

    1. AT1G72830.1 [+] show detail - nuclear factor Y, subunit A3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan CCAAT-binding factor, conserved site 0
    HMMPanther TRANSCRIPTIONAL ACTIVATOR PHP2-RELATED 2.4e-136
    HMMPanther CCAAT-binding transcription factor, subunit B 2.4e-136
    FPrintScan CCAAT-binding transcription factor, subunit B 9.1e-24
    FPrintScan CCAAT-binding transcription factor, subunit B 9.1e-24
    ProfileScan CCAAT-binding transcription factor, subunit B 37.254
    HMMSmart CCAAT-binding transcription factor, subunit B 5.5e-38
    HMMPfam CCAAT-binding transcription factor, subunit B 9.8e-30

    See the detailed result >

    AT1G72830.1

    Model type
    Protein coding
    Short Description
    nuclear factor Y, subunit A3
    Curator Summary
    Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.
    Computational Description
    "nuclear factor Y, subunit A3" (NF-YA3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A8 (TAIR:AT1G17590.4); Has 684 Blast hits to 684 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 132; Plants - 381; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR