F21949

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21949

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21949

Determination of introduced cDNA(s)

  • RAFL19-61-E05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-61-E05 - Resource: pda20191

    full reading [+] show sequence

    Nucleotide sequence: RAFL19-61-E05 - full reading 
    ACTCTCACCA GTCACAACCA AAAAAAAGAA AACACAAAAA CAAAGATTAT 
    AATGGCTTCC TCAACCATGG CTTTGTCCTC CCCTGCCTTC GCCGGAAAGG 
    CTGTGAAGCC TGCCGCATCA GATGTCCTCG GAAGCGGCCG TGTGACCATG 
    AGGAAGACTG TCGCCAAGCC AAAGGGTCCA TCAGGCAGCC CATGGTACGG 
    ATCTGACCGA GTCAAGTACT TGGGTCCATT CTCCGGCGAG CCCCCGAGCT 
    ACCTTACCGG TGAGTTCCCC GGTGACTACG GATGGGACAC CGCTGGTCTA 
    TCCGCCGACC CAGAGACCTT CGCCAGGAAC CGTGAGCTAG AAGTTATCCA 
    CAGCAGATGG GCCATGCTCG GAGCCCTAGG CTGCGTTTTC CCTGAGCTAT 
    TGGCTAGGAA CGGAGTGAAG TTCGGAGAAG CGGTTTGGTT CAAGGCCGGT 
    TCACAGATCT TCAGCGACGG AGGATTGGAC TACTTGGGCA ACCCGAGCTT 
    GGTCCACGCT CAGAGCATCT TAGCCATTTG GGCTACTCAA GTTATCCTCA 
    TGGGAGCTGT TGAAGGCTAC AGAGTCGCCG GAGATGGTCC ATTGGGAGAA 
    GCAGAGGACT TGCTTTACCC AGGTGGCAGC TTCGACCCAT TGGGCCTCGC 
    TACTGACCCC GAGGCTTTCG CAGAGTTGAA GGTGAAGGAG CTCAAGAACG 
    GAAGGTTGGC TATGTTCTCT ATGTTTGGAT TCTTCGTTCA AGCCATCGTC 
    ACCGGAAAGG GACCTTTGGA GAACCTCGCC GACCATTTGG CCGACCCAGT 
    CAACAACAAC GCTTGGGCCT TCGCCACCAA CTTCGTCCCC GGAAAGTGAG 
    CGGCTGCTTA TTATGTGAAT GAGAGCAGAG AAAGAGAGTT TGTTTGTGGT 
    CTATTCTATG TAAATTTGTG AACTTTCCTT TGTGGTATCT TTGTATAGAA 
    ATCGAACCTC TTTTTCTCTA ACTGTGTTGG CGTTTTATCT GAAGACTCAA 
    TTGAATTGAA ATATCCACTC TTGTAAAATT CATATGTTCT GAAAAAAAAA 
    A

    Gene models with high sequence identity

    1. AT2G34420.1 [+] show detail - photosystem II light harvesting complex gene B1B2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Chloroa_b-bind 9e-50
    superfamily Chlorophyll a-b binding protein 9.6e-81
    HMMPanther Chlorophyll A-B binding protein 2.4e-199

    See the detailed result >

    AT2G34420.1

    Model type
    Protein coding
    Short Description
    photosystem II light harvesting complex gene B1B2
    Curator Summary
    Photosystem II type I chlorophyll a/b-binding protein
    Computational Description
    photosystem II light harvesting complex gene B1B2 (LHB1B2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, guard cell, juvenile leaf, cultured cell, leaf; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2425 Blast hits to 2343 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2093; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR