F21705

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21705

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
T2  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21705

Determination of introduced cDNA(s)

  • RAFL06-70-F02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-70-F02 - Resource: pda17220

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-70-F02 - full reading 
    CCCGAACTCA CTTCTCTCTC TCTCTCTCCG CCTCCTTTTA AGACCAAATC 
    TCTCTCTACC TCTATCTCTC TCTCCGCCAT TACCAGAGCT CAACGAGCTC 
    TCACTTTCTT TACGCACACT TGTTGGAACG AAATATATTC ATAGAGAAGA 
    AGAATCTCGA AACTCTTGAA TCTAAAACAA CTCGGAGACT CTGTTTTCCC 
    TTTCCGGAGA TCAGATCGGA TCAAGATGCA GACAACCAAC GGCTCAGATT 
    CGACGTTGGC AACTTCCGGA GCCACACCGC CGAATCAACA AACCCCTCCT 
    CCACCTCAGC AGTGGCAGCA GCAGCAACAG CAACAGCAAC AGTGGATGGC 
    TGCCATGCAA TATCCACCAG CGGCGGCGAT GATGATGATG CAGCAGCAAC 
    AGATGCTGAT GTATCCTCAT CAATATGTTC CGTATAATCA AGGTCCTTAT 
    CAGCAGCATC ATCCTCAGCT TCACCAATAC GGGTCTTATC AACAGCACCA 
    GCACCAGCAA CACAAGGCTA TTGACCGTGG ATCTGGAGAT GATGTCAAGA 
    CTCTTTGGGT TGGTGATCTT CTTCATTGGA TGGATGAGAC TTATCTCCAT 
    TCTTGCTTTT CTCACACCGG CGAGGTTTCT TCTGTGAAAG TTATACGTAA 
    CAAGCTCACT TCTCAATCAG AAGGGTATGG GTTTGTTGAG TTTCTTTCAC 
    GTGCTGCAGC TGAAGAAGTT CTTCAGAACT ATAGTGGTTC AGTGATGCCA 
    AACTCGGACC AACCCTTCCG TATAAACTGG GCATCTTTTA GTACTGGTGA 
    AAAAAGAGCA GTGGAAAATG GTCCAGACCT ATCTGTTTTT GTGGGAGACT 
    TGTCTCCAGA TGTCACTGAC GTTTTATTGC ATGAGACCTT TTCTGATAGA 
    TATCCTTCTG TCAAAAGCGC CAAAGTTGTG ATTGATTCCA ACACCGGCCG 
    GTCCAAAGGT TATGGTTTTG TGAGGTTCGG TGATGAAAAT GAGAGGTCAA 
    GGGCTTTGAC AGAAATGAAT GGAGCTTACT GTTCGAACAG GCAAATGCGT 
    GTAGGTATTG CAACTCCCAA AAGAGCGATT GCTAATCAGC AACAACATTC 
    TTCACAAGCT GTGATTCTGG CTGGTGGACA TGGATCAAAT GGTTCCATGG 
    GTTATGGCTC GCAGTCTGAT GGCGAATCAA CTAACGCAAC AATATTTGTT 
    GGCGGCATTG ACCCTGATGT TATTGATGAA GACCTCAGAC AACCTTTTTC 
    CCAGTTTGGA GAGGTTGTTT CAGTGAAGAT CCCAGTAGGG AAAGGATGTG 
    GATTTGTCCA ATTTGCTGAC AGGAAGAGTG CTGAAGATGC TATCGAGAGT 
    TTGAACGGGA CAGTCATCGG CAAGAACACT GTCAGACTCT CCTGGGGACG 
    AAGCCCAAAC AAGCAGTGGA GAGGAGACTC AGGGCAGCAG TGGAATGGAG 
    GATACTCACG AGGACATGGT TACAACAATG GAGGAGGATA TGCTAACCAC 
    CACGACTCCA ACAACTATCA TGGGGAGAAT TGAAGAGACT CATCAAGTGA 
    TCATCTTCAT CATGGTTTCA CATATCAAAG CTAAAACCTG TAGTCGAAAG 
    AAGAATTTTG TTAGATGGAT TTGATTTTGA TAGACTTGTT GTTTGGAGGA 
    GATTCAAAAA TTTTGGTTAC TGGTTTGTCT CAGACTAATA TAAATGGTTG 
    CAACTTGTTG GATCAAAAAA AAAA

    Gene models with high sequence identity

    1. AT3G19130.1 [+] show detail - RNA-binding protein 47B
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart RNA recognition motif, RNP-1 3e-13
    HMMSmart RNA recognition motif, RNP-1 3.6e-19
    HMMSmart RNA recognition motif, RNP-1 4.9e-22
    HMMPfam RNA recognition motif, RNP-1 4.2e-11
    HMMPfam RNA recognition motif, RNP-1 3.1e-17
    HMMPfam RNA recognition motif, RNP-1 2e-18
    HMMPanther NUCLEAR ACID BINDING PROTEIN 1.3e-178
    HMMPanther RNA-BINDING PROTEIN 1.3e-178
    ProfileScan RNA recognition motif, RNP-1 14.726
    ProfileScan RNA recognition motif, RNP-1 17.285
    ProfileScan RNA recognition motif, RNP-1 18.103
    superfamily RNA-binding domain, RBD 9.6e-27
    superfamily RNA-binding domain, RBD 3.2e-20
    superfamily RNA-binding domain, RBD 3.8e-19
    Gene3D Nucleotide-binding, alpha-beta plait 4.6e-16
    Gene3D Nucleotide-binding, alpha-beta plait 3.3e-21
    Gene3D Nucleotide-binding, alpha-beta plait 1.7e-23

    See the detailed result >

    AT3G19130.1

    Model type
    Protein coding
    Short Description
    RNA-binding protein 47B
    Computational Description
    RNA-binding protein 47B (RBP47B); FUNCTIONS IN: RNA binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 47A (TAIR:AT1G49600.1); Has 37628 Blast hits to 21966 proteins in 866 species: Archae - 14; Bacteria - 2376; Metazoa - 18486; Fungi - 4600; Plants - 6856; Viruses - 8; Other Eukaryotes - 5288 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR