F20526

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20526

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20526

Determination of introduced cDNA(s)

  • RAFL05-16-O12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-O12 - Resource: pda02702

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-O12 - full reading 
    AGCAAACCGA AGTGGGAACG AAACCCCATG CTCCAAGTCC AATTAAATAA 
    CATATGTCCA CAGAAATGTT TTCAAAATTC GAATAAGCCA CAGCAACGTG 
    TCTTGTTCAT ATATCCACTA TAACCCAAAG CTGCTTCAAT GGTCGGATAT 
    GGACACGTGT CAGTTAATCA GACCATCTCC AAGAAAAAAT ATCCCAAATC 
    TTTCTTCCCT ATTCAGTCCC CCAATCAACA ATCCTCTTCA CATTTCTATT 
    TTCTCCTCCG AGGTCGTCTC TCGACCAAAC CACAAAAACC AGAACAAAAA 
    TAACTAAAAA ACAATCAGAT CTGAGATCGA ACAAAACAAC ATGAACACGT 
    TAATCCCATC GGAGAAAAGA TGGATCATCA CCGGCGTTTT ACTAGCCGGT 
    TTAGTTGGCG GTGCTTTGCT TTTCACAAGC TTCATACGAG CCGCTGACGA 
    AACGCTCTTC CTCTGTTCCA CAGCAAGCGC CAAAAGCAGA GCGGTGGCTG 
    CGGCAGCTGA TTACGAAGCG ACTCCGATTC AGCTTCAAGC GATCGTCCAC 
    TACGCGACAT CTAACGTTGT CCCACAACAG AATCTTGCTG AGATCTCGAT 
    CTCTTTCAAC ATCTTGAAAA AGCTAGCTCC GGCTAACTTT CTCGTGTTCG 
    GTCTCGGTCG TGACTCGCTC ATGTGGGCTT CTTTAAATCC ACGTGGCAAA 
    ACCTTGTTCT TGGAAGAAGA TCTTGAATGG TTTCAGAAAG TGACCAAAGA 
    CTCTCCTTTC TTACGTGCGC ATCACGTGCG TTACAGGACG CAGCTTCAAC 
    AAGCCGATTC GCTTCTACGT TCGTACAAAA CGGAGCCTAA GTGTTTTCCG 
    GCGAAATCTT ATCTCCGGGG AAACGAGAAG TGTAAGCTAG CTCTCACGGG 
    ACTGCCCGAT GAGTTCTACG ATACAGAGTG GGATCTGCTG ATGGTCGATG 
    CTCCTAAAGG TTACTTCGCA GAAGCTCCGG GAAGAATGGC GGCGATTTTC 
    TCGGCGGCTG TTATGGCTAG GAACCGGAAG AAACCGGGAG TTACGCACGT 
    GTTCTTGCAC GATGTTAATC GGAGGGTGGA GAAGACTTTT GCCGAGGAGT 
    TTTTATGCCG GAAGTATAGA GTCAACGCCG CCGGGAGGTT ATGGCATTTT 
    GCTATTCCTC CGGCGGCTGC GAACGCTACG ATTGACTCTG GTGATTATAG 
    GTTTTGCTAA GATTGCGACA CGATTTATCT TCTTATTTCC TCTTTTGCCC 
    TTTTATTTTA CTTTTTTGAG GAATTTTATT ACAGCATTGG GTTCACTT

    Gene models with high sequence identity

    1. AT1G27930.1 [+] show detail - Protein of unknown function (DUF579)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Conserved hypothetical protein CHP01627 1.8e-84
    HMMPfam Protein of unknown function DUF579 1.2e-75

    See the detailed result >

    AT1G27930.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF579)
    Curator Summary
    Function unknown. Interacts with eIF3.
    Computational Description
    FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G67330.1); Has 251 Blast hits to 250 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR