F19832

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19832

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	present in greater numbers in organism (PATO:0000470) (Cauline leaf::Number::many)
	rosette leaf (PO:0000014)	desaturated green (PATO:0001272) (Rosette leaf::Color::pale) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)
T2
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	present in fewer numbers in organism (PATO:0001997) (Stem::Number::few) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19832

Determination of introduced cDNA(s)

RAFL09-14-D01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-14-D01 - Resource: pda17645

full reading [+] show sequence

CCGACAATCT CTCCATTTCT CTCTCTTCCG TCTCTTTTTT TATCTCTCTC 
TCTAGAATCT TGAAGAGAGC GAGCTTCCAT TAAAATCTCA TTCTAACGAT 
CTCCAAGCTC TTTCTTCAAT CATCTCCAGG GGAATGTCAG AGAGTACTAA 
TGAAGATAGT GGAGCAGGAA GATCATCACT GGAAGAGAAT TCAAATGGAC 
AAAGAAGTCA ATCAGAAGAA GCAATCGCTG AGTGGCGTTC TTCTGAACAA 
GTTGAGAATG GAACTCCTTC TACATCTCCA CCGTATTGGG ACATCGATGA 
TGATGACGAT TTTGGATCAA AACCATCTCA ACTATTTGGG AAAAATACTT 
GGACGATTGA GAAATTTTCA GATATCAACA AACGAGAGCT CCGCGGCGAT 
GTTTTTGAAG TCGGGGGTTA CAAATGGTAT ATATTAATTT ATCCACAAGG 
GTGTGATGTT TGCAACCATC TCTCTTTGTT TCTATGTGTT GCACACCATG 
AAAAGCTTCT TCCAGGCTGG AGTCATTTTG CTCAGTTTAC TATAGCTGTG 
TCGAATAAAG ATCCGAAGAA GTCAAAGCAT TCAGATACGT TACACCGGTT 
TTGGAAGAAA GAGCATGATT GGGGTTGGAA GAAATTTATT GAGTTACCTA 
AATTGAAGGA AGGGTTTATA GATGATTCTG GTTGTCTTAC AATTAAAGCT 
CAAGTGCAGG TGATCAGAGA GAGAGTGGAC CGACCTTTTC GCTGCCTTCA 
TTATAAATAT AGGGAGGAAC TTGTTAGGGT GTATTTGGGA AATGTAGAGC 
AAATTTGCTG GCGGTTTGTG GAAGAGAAAA GAAGCAAGCT TGGTAGGTTG 
ATAGAGGACA AGGCAAAATG GAAAAGCTTC TGTGCTTTCT GGATGGGGTT 
GGACCAAAAT TCAAGGCGTC GAATGTCCCG AGAGAAAATG GATGTGATTC 
TAAAAATAGT TGTAAAACAC TTCTTTGTCG AGAAGGAAGT TACATCTACT 
TTGGTGATGG ATTCCTTGTA TAGTGGATTG AAGGCTCTTG AAGGCCAAAA 
TAAGAACAAG GAGAGTAGGC CGAGACTAAT GGATACTGAA GAATCCACAG 
CTCCAATTGT TAGCGTGGAC AAAGATTCGT TTGCATTAGT TGATGATGTG 
TTATTACTCT TAGAGAAGGC TGCTCTGGAG CCATTGCCTA AAAAAGAGGA 
AAAGAGTTCT CAAAACCGTA CGAAGGATGG GAATGCTGGA GAGGAATTCA 
GTAGAGAAGC CGTTGAGCGT GATGATAGGC GTTTAACTGA ATTGGGTAGA 
CGGACTGTGG AGATATTTGT TCTTGCACAT ATCTTCAGGT AATAAGGCAT 
AATTTTTCCT CTTTGTTTTT TTATTTGGTG CACCAGGCAT AATTTTGCCT 
TTGCTTTAAA ATTTCCATAC AAGTGAATCA TAAGCACATA ATTTGTTTAC 
AAGCTAAGAC ATGCGTGACG ATCTTATTCT GAAACCGCTG ATAGTGTTTA 
TTTTGTATTT CTGGTCTTCT GGTATTGTGT GTCTTTGTGT TCTTAGCTGT 
ACCTCATGTA TAGCACTGCA ATCTTTCTGA GAAATGCAGC AACAAAATTG 
AAGTTGCATA CCAAGAAGCT ATTGCATGGA AAAGGCAAGA AGAACTTATT 
CGTGAAGAAG AGGAAGCGTG GCTGGCAGAA AGCGAACAGA AGGGCAAAAG 
AGGAGCATCT GAAAAAGAGA AGAAATCTAA GAAGAAACAG GCGAAACAGA 
AAAAGAACAA AAACAAAGGA AAGGAAATGA GGAAAGAAGA CAAGGTGAGA 
ACCCAAACAG AAGAAAGGGA AATTGAGAAA GAGGAATGTG TGAGAGCGAT 
AGCAGAATCG TCAGCTGAAA AACCTGACAC ACTTGGAGAT GTCTCTGACG 
TGTCTGATTC AGTAGATAGT TCAGCTGAAA TACTTCAGCT TGATTCAGAA 
GATAGAGAGA GTAGTCCTGT TCATTGGGAA ATGGATGCCT CAGAGGTTCA 
TCCTCCTTCT GCAGGAGACA CTAGCAGAGG AAGAGGCAAT TCTTTTTCTA 
TACCTAATGG AGTTGCAGAA AGAAAGGGTC TGTCCACAAT GGATGATAGT 
TCTTCAACCT GTTCTAATGA CTCGATTCAA TCAGGGGTAG CCAATGGGTC 
ATACAAAGGG AATGTATTAA ATTGCCAAAG CCAAAAGTGG TTTAGCAATG 
GAAAAATACA ACCAGGAAAA GTATCTGATT CCAACAGTTT AGCCAGTGAA 
AAAGAGCATC AACCTTCAAG ACTTGCATCT GACCCTAAAA ATCAGAGCCA 
TTCTTCTGAT ATACGCAGAG TTGGTGAAGC TGACATAGTT ATCTCCCACA 
TTCAAAAACC AGAGAGCCCT AAGGAACGTA GTCCTGTTAG CAAGGATCCC 
AACATGATTC AGATGAAAGA GAAAAGTGCT GCGGTACTTT CCCCATCCAG 
AGCTGCTCCT TGGAATCCTC CGTCTCCAGT GCAAGCAAAA CCGGAGAAAA 
AGGGTGTTTC AAATGTAGAG GCGGTTCCAA ACAGGAAAGT CATATCTGTT 
AAATCACCTT CATCACATCA TGCATCACCA TCTCGTGAAG CTCAGTTGCA 
AACAGTGGGT CCTAGAGCTG ATATACAGAA AATCGCTTCT CCGAAACCTG 
TGGAACAACC AGCACCTCCT ATGTCAAGGC CTTTGAGTGC TCCTATAATC 
CCTCCAACGC AAGCTGCACC TGTAATATCT GCTGTTCAAA CCTCGACTGC 
GTCCCTTGCT CGTTCAATGA GCTCAACAGG GCGTTTAGGT TCACCGACAC 
ATAGCCAAGC TTACAATCCT CAATCCTACA AACATGCCAT AGTGGGTTCA 
TCTGGTTTCA CCCACCCAAG CTCTCAATCG AGTGGAACAA GCACATTGCC 
GCCTTATTCA CATCCGTCTC CTATCTCAGT ATCAAATCAG TCTGGTTTCC 
CTATCAATGT TGGCTCTTGG GATGTTTCTT CTGGTGGGCT ATTGTGGACC 
GGTGGTTCGA GTTCAACCAG AGATACAACA ACAACCATCA GCGGGAATCA 
CAAAACAAAC ACTTACAACG CACCCGTAGT AACTACCAGC ATCAGGCCTA 
CTAATGTTCA GATAGGGAGA ACGGCACAGA GTCTGATGAC CGATGAGTTC 
CCTCACCTTG ATATCATCAA TGATCTGCTT GCAGACGAAC ACGGTACAAT 
GGATAATAGC GTATACCGTG TACCACAACA GTTCAACAAC CAGTACTCAT 
ATCATGGCGG TGCGGATCTC GGGATCTCTA GCAGGTCTAG GAGTTACAGT 
GATGATGGAT TTCACCAGTC TTACGGTGAA TACATGCCAC ATTCTGCTTC 
TTCCTCGCCA TATGGTAATG GGCAAACACA ATCGCAATGG CAGATGGCAA 
ATATGGATTT CTCTTTACCG GCTATGAGGA ACCAAGACGA TGTATCAGCA 
TCAGCAACAG CTACTTACTC TTACTTTGAT TTAGATTCAT CAAACCCGAA 
TTTGTCTGGA ATCAACGGCT ATAGGGACTT CAGGCCATCG AACGGACACT 
GAGGTTTGGG TTTAAAGAGT GGCATTGCAT TGTAATGTTT ATTATATAAA 
GATGGAAAGC AAAAAACATT TGTGTAAAGA GAGTTTTCGT CCTCTTCGTT 
TCAAATGAAT CCTTTTTTCT CAAAAAAAAA A

Gene models with high sequence identity

AT5G43560.2 [+] show detail - TRAF-like superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	MATH	24.38
HMMPanther	TRAF-LIKE AND MATH DOMAIN-CONTAINING	2.7e-132
HMMPanther	UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELAT	2.7e-132
HMMPanther	TRAF-LIKE AND MATH DOMAIN-CONTAINING	5.6e-169
HMMPanther	UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELAT	5.6e-169
superfamily	TRAF-like	1.1e-22
HMMPfam	MATH	1.4e-19
HMMSmart	MATH	2.4e-16

See the detailed result >

AT5G43560.2

Model type: Protein coding
Short Description: TRAF-like superfamily protein
Computational Description: TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT1G04300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR