F18819

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18819

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18819

Determination of introduced cDNA(s)

  • RAFL05-19-C14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-19-C14 - Resource: pda07428

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-19-C14 - full reading 
    GCTTTAACGA CAGTCGCCGA GTGAGAGATA TAGAGAGAGA AAGATGCCGG 
    TGCACGATGA GCAAGAGCAT GAGGTGTACG GTGGAGAGAT CCCAGAAGAG 
    GAAGAAGGTG AGATGGATAC GGAAGAGTAC GAAGAACACG GCGGAGAAGA 
    AGGTGCCGCC GCCGGAGATG AGGAGCTTGA ACCTGGCTCT AGCTCTAGGG 
    ACTTGGAGGA TATGAAGAAA CGAATTAAGG AGATTGAGGA AGAAGCTGGA 
    GCTTTGCGTG AAATGCAAGC CAAGGCTGAG AAAGATATGG GTGCTAGTCA 
    AGACCCTTCA GGTGGTGTTA GTGCGGCTGA GAAGGAAGAA GTGGATTCGC 
    GTTCAATATA TGTTGGCAAT GTGGACTATG CATGTACTCC AGAGGAAGTC 
    CAGCAGCATT TTCAATCATG TGGGACAGTG AATAGGGTTA CAATTCTGAC 
    AGATAAGTTT GGTCAACCTA AAGGTTTTGC GTATGTCGAA TTTGTGGAAG 
    TAGAAGCTGT TCAGAATTCG CTTATTTTGA ACGAGTCAGA ACTACATGGT 
    CGTCAGATAA AGGTATCTGC AAAGAGGACT AATGTACCTG GAATGAGGCA 
    ATTTCGAGGA AGAGGGCGTC CCTTTAGACC GATGAGGGGA TTCATGCCAG 
    GAGTTCCATT TTATCCTCCA TATGCTTATG GGAGAGTTCC CAGGTTCAGA 
    CGGCCTATGC GCTACAGACC GTACTGATTA GGCAAATTGG TGTTAAAAAA 
    GTAGCAGCTG CTTCTCCGTT TTCGGGAAAG CTTATCATCA TCAACACGGT 
    TCATCGGACG CTGCAGTTGT TTCGATTAAC AGAGATGAGT TGAAGAATTG 
    TATGGCAGAA GAGAGAGGGG AATTATATTC TAGATTTTCT GTACAATATT 
    TGATGACAAG TGCAACATTT TGAGGAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT5G51120.1 [+] show detail - polyadenylate-binding protein 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther POLY-A BINDING PROTEIN 2 1.2e-28
    superfamily RNA-binding domain, RBD 3.8e-24
    ProfileScan RNA recognition motif, RNP-1 16.602
    Coil coiled-coil 0
    HMMSmart RNA recognition motif, RNP-1 7.9e-21
    Gene3D Nucleotide-binding, alpha-beta plait 2.2e-21
    HMMPfam RNA recognition motif, RNP-1 1.5e-16

    See the detailed result >

    AT5G51120.1

    Model type
    Protein coding
    Short Description
    polyadenylate-binding protein 1
    Curator Summary
    Encodes a homolog of the protein PABN1, a polyadenylation factor subunit.
    Computational Description
    polyadenylate-binding protein 1 (PABN1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G10350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR