F15713

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15713

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15713

Determination of introduced cDNA(s)

  • RAFL09-27-M17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-27-M17 - Resource: pda17677

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-27-M17 - full reading 
    GATTGATGTT CAGTGAACTT GCACCAAACT TCACTTCTTC TATACTTCTT 
    CATAGCCACA AACTCAGTTC TTTGCAAGAA ACACAAACTT AAGTATTCAA 
    AATATCGTCA TCATGTTCTC AAGATTCCAT GCTCTGTTTC TTCTCCTTGT 
    TCTTTCAGTA AGAACATATA AATGTGTATC TTCATCTTCT TCTTCTTCTT 
    CTTCTTTCTC ATTCTCTTCA TTTTCTTCTT CGTCTTCTTC TCAAACTCTT 
    GTCTTGCCTC TAAAGACCCG AATAACCCCA ACGGATCATC GACCCACCGA 
    CAAACTTCAT TTCCACCACA ACGTCACTCT CACCGTTACT CTCACCGTCG 
    GTACTCCTCC TCAAAACATC TCCATGGTCA TTGACACTGG CAGTGAACTC 
    TCCTGGCTTC GTTGCAACCG TTCCTCAAAC CCAAACCCGG TTAACAATTT 
    TGACCCGACC CGTTCCTCCT CTTATTCCCC AATCCCCTGT TCCTCACCCA 
    CTTGTCGTAC CCGGACCCGA GACTTCCTCA TACCCGCTTC TTGCGATTCA 
    GACAAACTCT GCCACGCAAC TCTATCCTAC GCCGACGCTT CCTCCTCCGA 
    AGGTAACCTC GCCGCCGAGA TTTTCCACTT CGGAAACTCC ACCAACGACT 
    CCAATCTCAT TTTCGGGTGT ATGGGTTCCG TATCCGGATC CGACCCGGAA 
    GAAGATACCA AAACAACTGG GTTATTGGGT ATGAACCGTG GTTCCCTCTC 
    TTTTATCTCT CAAATGGGTT TCCCCAAATT CTCTTATTGC ATCTCCGGCA 
    CCGACGACTT CCCGGGGTTT CTTCTCCTCG GCGACTCTAA CTTCACGTGG 
    TTAACGCCGT TAAATTACAC GCCGTTAATT CGTATCTCTA CGCCGTTACC 
    TTACTTCGAC CGTGTAGCTT ACACCGTCCA GCTCACGGGT ATTAAAGTTA 
    ACGGTAAGCT TTTACCCATC CCTAAATCGG TTCTCGTACC GGATCATACC 
    GGTGCTGGTC AAACCATGGT TGATTCCGGT ACTCAGTTTA CTTTCCTGCT 
    TGGACCGGTT TACACCGCAC TTCGATCCCA TTTCTTAAAC CGGACAAACG 
    GAATCTTAAC GGTTTACGAA GACCCAGATT TTGTTTTCCA AGGAACCATG 
    GATTTGTGTT ATCGGATTTC ACCGGTTCGT ATACGGTCCG GAATTCTCCA 
    CCGTTTACCA ACAGTTTCTC TGGTTTTCGA AGGAGCCGAG ATAGCGGTTT 
    CGGGTCAGCC GCTATTGTAC CGAGTCCCGC ATCTCACGGT TGGAAACGAT 
    TCGGTTTATT GTTTCACATT TGGAAACTCC GACCTTATGG GAATGGAGGC 
    TTACGTGATT GGACATCATC ATCAGCAGAA CATGTGGATC GAATTTGATC 
    TACAAAGATC AAGAATCGGT TTAGCTCCGG TAGAATGTGA TGTATCGGGT 
    CAGAGACTCG GAATCGGATC GTAAACCATA GATAACCAGT GTGTAATTAT 
    AGTTTTTTGC CTACGTAGAA ATGGTTTCTC TAGTAGAAAG GTATGCACGT 
    GACTACAATG AGATTTGTGT TACCGACACG AGCGGGTGTG TAATAACTTC 
    GAGTTTGGTA GTAGTTAGTT AGTTGTCTCT GTTTGCTTTT GACATGGTCT 
    TTTCTTTGCG TAATTAATTT TTAGCTGAGA GTTATATCAA AAAAAAAA

    Gene models with high sequence identity

    1. AT5G02190.1 [+] show detail - Eukaryotic aspartyl protease family protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Peptidase aspartic, catalytic 3.6e-31
    superfamily Peptidase aspartic 1.2e-83
    HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 1e-99
    HMMPanther Peptidase A1 1e-99
    HMMPfam Peptidase A1 2.4e-12
    PatternScan Peptidase aspartic, active site 0

    See the detailed result >

    AT5G02190.1

    Model type
    Protein coding
    Short Description
    Eukaryotic aspartyl protease family protein
    Curator Summary
    encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage.
    Computational Description
    PROMOTION OF CELL SURVIVAL 1 (PCS1); CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT2G39710.1); Has 2066 Blast hits to 2053 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 96; Plants - 1822; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR