F15248

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic) desaturated green (PATO:0001272) (Cauline leaf::Color::pale)
	rosette leaf (PO:0000014)	desaturated green (PATO:0001272) (Rosette leaf::Color::pale) decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Other)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	desaturated green (PATO:0001272) (Rosette leaf::Color::pale) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15248

Determination of introduced cDNA(s)

RAFL09-95-B11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-95-B11 - Resource: pda09078

full reading [+] show sequence

ATTCCTCTTT TCTTCGTCTC CCACCATTTC TGCAGAAGAA GACAAATAAA 
AAAGCTCTCA TTTATCTTCG TGGAGATCTA AAAGAAGGAG GAAGACATTT 
CTTCCCTCTG GATCTCCAAA AGTAAGAACA TTTACAAGAA ACGAGAGGTT 
TGGGTGGGGA AGGAAAGAAG GAGGAAGAGG CAATGTCAGC TAGGTATTGG 
TGTCACATGT GTTCACAAAT GGTGAATCCA GTTATTGGTG CCGAGATCAA 
ATGCCCCTTT TGCCAAAGCG GGTTTGTCGA GGAAATGAGC CGTGAGATTA 
ATGGCGGCAG CAGTAGCAGT CTAAGGGAGG TTCAAGACCC TGAGATTGAT 
TTTGGTACAG ACCGTGCATT GTCTCTATGG GGTCCAATCT TGCTTGGAAT 
GATGAGTAAT CCTCGTAGAC GTAGAAGGTT TAGGAGGACA GAGTTTGGTG 
TGGATAATGA TGAGGTCAAT GTATCTGATG ATGTTGATGG AAATGACAGC 
GTCGATATTG ATCGACATCA TCATCGTCGT CATCGCCACA GGCAACAAGG 
TAGAGAGATT GATTTAGACA GAGAGTTTGA GTCTATCCTT AGGAGGAGAC 
GGAGAAGCTC AGCTACTATA TTGCAGTTGC TTCAGGGTAT TCGTGCAGGG 
ATTGCTTCTG AGTATGAGAG CTCGGATCGA GACCTGTTAA ATCAATCAGC 
TGTTGTTCAG GGTTCAACGA GTTTGAATCA AAACCGGAAC AATACTTCTC 
TTTCTGCAAT TGGAGATTAC TTTGTTGGAT CCAGTTTAGA CCATTTGCTT 
GAACATCTAG CTGATAATGA TTCAATCAGG CACGGGAGTC TTCCAGCACG 
TAAAGAAGTT GTGGATAATC TCCCAACGGT TAAGATAAGT GAATCATTGC 
AGTGCTCGAT TTGTTTGGAT GATTTTGACA AAGGAAGTGA AGCTAAAGAG 
ATGCCGTGTA AGCACAAGTT TCACATCCGG TGTATAGTAC CGTGGCTCGA 
GCTTCACAGT TCATGTCCCG TGTGCCGATA TGAACTCCCT CCTGATGATG 
AGACCAAGGT TAATCCTGTA AGACCGAGAA CAAGAACTCT AGAGATCAAC 
GTAAGTAATG AGAATGTGGA AGATGATGCA AGGAACAGTA ATGTGAGCGA 
GAGAAGGTTC TCTTTTCCAT GGCCGTTCAG CGGATTATTC TCTTCATCCT 
CTTCGTCATC CGCATCGGCC TCGGGGTCAT CTCATCTCGG TGAGAACTCG 
TAAACTGCTA TTCCTCAGCT TATAGTACAT AAAATCTTGT TCACTCAGAT 
TGTTGAATAC TGCATAACAA ATAAACACTT TCGAGGAATG GAATCTTTTC 
TTTATTTG

Gene models with high sequence identity

AT4G26400.1 [+] show detail - RING/U-box superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Zinc finger, RING-type	3.6e-08
Gene3D	no description	5.6e-14
ProfileScan	Zinc finger, RING-type	12.489
HMMPanther	RING ZINC FINGER PROTEIN	3.9e-40
superfamily	RING/U-box	1.1e-16
HMMPfam	Zinc finger, C3HC4 RING-type	8.4e-07

See the detailed result >

AT4G26400.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G56340.1); Has 10466 Blast hits to 10426 proteins in 293 species: Archae - 0; Bacteria - 6; Metazoa - 2695; Fungi - 997; Plants - 5209; Viruses - 70; Other Eukaryotes - 1489 (source: NCBI BLink).
Link: InterPro Scan - TAIR