F13436

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13436

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13436

Determination of introduced cDNA(s)

RAFL05-11-O04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-O04 - Resource: pda09311

full reading [+] show sequence

TGCCACTCAT TTTTCCTATT TTTCGCTTTG CGTGCCTTCT TATCAACTTG 
TAAACAAAGC TACAAATATC TTTAAATAAG GACCCAACTC TTTTTCAATT 
CCTCCCATCA ATCTTCTTCA TTTGTTCTTC TGTTGGTGGT GGTGATCTAG 
TTTTCAAAGA ATCGATTTTG CCAAGTGGGT TCTTCTTGAT AACCTTTCTT 
CTTCTTTGAA ATGGGTTCTT CTGTGGAGCA GAACATTCTT GTTACTGGTG 
GTGCTGGCTT TATCGGGACG CATACTGTTG TTCAACTTCT CAAAGATGGT 
TTTAAGGTTT CGATCATCGA TAATTTTGAT AACTCTGTTA TCGAAGCTGT 
TGATAGAGTT AGGGAGCTTG TTGGTCCTGA TCTCTCCAAG AAGCTCGACT 
TCAATCTGGG TGATCTAAGA AACAAAGGGG ACATTGAGAA ACTATTCTCC 
AAGCAGAGAT TTGATGCTGT GATTCATTTT GCGGGTCTTA AAGCTGTGGG 
TGAGAGTGTT GAAAACCCTC GCCGCTACTT TGACAATAAC TTGGTTGGAA 
CAATCAATCT ATATGAGACC ATGGCAAAGT ACAACTGCAA AATGATGGTG 
TTTTCATCTT CTGCCACTGT TTATGGACAA CCTGAAAAGA TTCCATGCAT 
GGAAGACTTT GAATTAAAGG CTATGAATCC TTATGGTCGT ACTAAGCTCT 
TTCTTGAAGA AATAGCTAGA GATATTCAAA AGGCAGAACC GGAATGGAGA 
ATTATTCTGC TGAGGTACTT CAATCCTGTA GGAGCACATG AGAGTGGCAG 
TATTGGTGAG GATCCAAAAG GCATCCCCAA TAACCTCATG CCTTACATCC 
AACAAGTGGC CGTTGGACGT TTACCGGAAC TCAATGTCTA TGGACATGAC 
TATCCCACCG AGGATGGTAG TGCGGTAAGA GACTACATCC ATGTGATGGA 
TTTAGCAGAT GGCCATATCG CTGCGCTCAG GAAGCTATTT GCTGATCCAA 
AGATTGGTTG TACTGCTTAC AATCTAGGGA CTGGTCAAGG AACGTCTGTG 
TTAGAAATGG TTGCAGCTTT TGAAAAAGCT TCCGGCAAGA AAATCCCGAT 
TAAGCTCTGT CCGAGAAGGT CAGGAGATGC AACAGCAGTT TATGCTTCAA 
CAGAGAAGGC TGAGAAAGAA CTTGGCTGGA AGGCAAAATA TGGAGTGGAT 
GAGATGTGCA GAGATCAGTG GAAATGGGCA AACAATAATC CATGGGGTTA 
CCAGAATAAG CTTTGAATTT ACTTCTTTTG TTTGGAGTTA CCATTTCTAA 
TTACTCAAAT CTAAAAGAAA GAAATATACA TACATATGAT GATATAGTTG 
TGCTTTATAT TCCACATGTA TCGAACTGAT CTCTTACTTC GATGAATAAA 
ATGGAAAGTT GATTTGATTG

Gene models with high sequence identity

AT1G12780.1 [+] show detail - UDP-D-glucose/UDP-D-galactose 4-epimerase 1
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	UDP-glucose 4-epimerase	2.3e-190
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	2.3e-190
HMMPfam	NAD-dependent epimerase/dehydratase	3.8e-50
Gene3D	NAD(P)-binding domain	3.5e-61
FPrintScan	Nucleotide sugar epimerase	8.5e-05
FPrintScan	Nucleotide sugar epimerase	8.5e-05
FPrintScan	Nucleotide sugar epimerase	8.5e-05
HMMTigr	UDP-glucose 4-epimerase	1.3e-169
superfamily	NAD(P)-binding domain	1.4e-102

See the detailed result >

AT1G12780.1

Model type: Protein coding
Short Description: UDP-D-glucose/UDP-D-galactose 4-epimerase 1
Curator Summary: Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.
Computational Description: UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (UGE1); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: response to stress, galactose biosynthetic process; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (TAIR:AT1G63180.1); Has 42430 Blast hits to 42420 proteins in 2995 species: Archae - 799; Bacteria - 25009; Metazoa - 650; Fungi - 500; Plants - 1081; Viruses - 38; Other Eukaryotes - 14353 (source: NCBI BLink).
Link: InterPro Scan - TAIR