F13119

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13119

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13119

Determination of introduced cDNA(s)

  • RAFL04-19-H23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-19-H23 - Resource: pdz87428

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL04-19-H23 - 5 prime EST 
    GATCTAGAAT CTTCCCTCAA CCTCTAGAAA ACAACTTTCG TATCCTTCAA 
    AAACCCTAAA CCCTAGCTTT TGCACAGACG CAATTTCATC GCATCATTTT 
    GCAATTTTCC TTTACTGATC TGTCACCACC TCTTGAATTT CGAAACCATG 
    GCTACCGCAG CTCTCCTCCG CTCTATTCGA CGCCGTGAAG TCGTTTCCTC 
    TCCTTTCTCA GCTTACAGAT GCCTTTCAAG CAGTGGGAAA GCATCATTGA 
    ACAGTTCCTA TCTGGGTCAG AATTTTAGAA GCTTTTCCAG AGCCTTTAGC 
    TCGAAGCCTG CTGGAAACGA TGTCATTGGT ATTGATTTGG GTACTACTAA 
    TTCATGTGTT GCCGTCATGG AGGGGAAGAA TCCGAAAGTC ATTGAAAATG 
    CTGAAGGTGC TCGAACCACT CCATCAGTTG TAGCATTCAA CACGAAAGGA 
    GAACTTCTTG TGGGTACACC AGCCAAGCGA CAAGCTGTCA CTAATCCTAC 
    AAACACAGTA TCTGGAACGA AACGTTTGAT TGGGAGAAAG TTCGACGATC 
    CACAAACTCA GAAAGAAATG AAGATGGTGC CTTACAAGAT TGGGCGTGCA 
    CCTAATGGCG ATGCGTGGGT TGAAGCCAAT GGTCAGCAGT ATTCTCCTAG 
    TCAGATTGGA GCGTTTATCT TG

    Gene models with high sequence identity

    1. AT5G09590.1 [+] show detail - mitochondrial HSO70 2
      E-value: 0; Score: 99.85

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL04-19-H23 - 3 prime EST 
    GAAAACTTCT TCTCTTTAAC CATCACATTA CATAACAAAG GTTTTTTAGC 
    AGAGAAACAT TAAGTTTAGT TCCCTGACAA AAGCTTATTC CAGAAACATA 
    TCCACTGCTC GTTGTTCTAA AAGGCAAAAG TTCCTTGGAC ATAGAACCCA 
    CCATGATCTA AACCTAATCT CTTAAAACCC AAGTGGCAAG AATTTACCAA 
    ATCTCCTCAC TTTTTCACTT CCTCGTACTC TGCTTCTGGA GCTTGATCAC 
    TGCCTCCCTC AGATCCTCCT CCTGGTGCAG AGCCTCCACC AGAACCACCA 
    GACATGTGCT CCCCAATCTT AGAAACAGCT TTGTTTGCCG CCTCAATCTT 
    GGCCTTGATC TCGTTGAGAT CATCCCCAGA GGAAGCGCTC CTTAGATCTG 
    CCACAGCATC TTCAATCTCC TTGGCGATTT CACTTGGGAT CTTCTCTCTG 
    TATTCACCAA GACTCTTCTC TATGCTGTAA ATTGTTGTGT CAGCTGTGTT 
    CTTGGTGTCG ATCAATTCTT TTCTTTCTTT GTCTTTCTGA GCATGCAACT 
    CTGCTTCTCT CACCATCTTC TGGATATCAT CCTCTGAGAG CCCACCAGAG 
    GATCGGATTG

    Gene models with high sequence identity

    1. AT5G09590.1 [+] show detail - mitochondrial HSO70 2
      E-value: 0; Score: 100.00

    AT5G09590.1

    Model type
    Protein coding
    Short Description
    mitochondrial HSO70 2
    Curator Summary
    heat shock protein 70 (Hsc70-5); nuclear
    Computational Description
    mitochondrial HSO70 2 (MTHSC70-2); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to salt stress, response to virus, response to heat; LOCATED IN: mitochondrion, cell wall, plasma membrane, chloroplast, mitochondrial matrix; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: mitochondrial heat shock protein 70-1 (TAIR:AT4G37910.1); Has 35090 Blast hits to 34955 proteins in 4871 species: Archae - 160; Bacteria - 17405; Metazoa - 3531; Fungi - 1665; Plants - 1246; Viruses - 305; Other Eukaryotes - 10778 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR