F12929

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12929

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Adult plant::Flowering::late)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12929

Determination of introduced cDNA(s)

  • RAFL04-15-P04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-P04 - Resource: pda07172

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-15-P04 - full reading 
    GTAATTGAAC AAAAGAAAGA AAAACTGATA ATGAAGGGTC TTCATCTCCA 
    CCTCGTCCTA GTCACCATGA CGATCGTTGC CTCCATCGCC GCCGCTGCAC 
    CGGCTGCTCC CGGAGGAGCT CTGGCTGATG AATGCAACCA GGATTTTCAA 
    AAGGTGACTT TGTGTTTGGA CTTTGCGACC GGGAAGGCAA CAATTCCGTC 
    TAAGAAGTGT TGTGACGCTG TTGAAGATAT CAAAGAAAGA GATCCAAAGT 
    GTTTGTGTTT CGTTATACAA CAAGCGAAGA CAGGAGGACA AGCCTTGAAG 
    GATCTTGGTG TTCAAGAAGA CAAACTCATT CAACTCCCAA CTTCTTGTCA 
    GCTCCACAAC GCTAGCATTA CCAACTGTCC AAAGCTTCTA GGGATTTCAC 
    CTAGCTCGCC AGACGCAGCC GTGTTCACAA ACAATGCCAC AACAACACCG 
    GTGGCACCAG CTGGAAAGTC TCCGGCAACT CCAGCTACGT CCACGGATAA 
    GGGAGGATCA GCTTCAGCAA AGGATGGTCA CGCAGTCGTT GCTCTAGCCG 
    TCGCTTTGAT GGCCGTCTCC TTTGTCTTGA CCTTGCCTAG ACATGTCACA 
    TTAGGGATGT AATCTTTTCT TATGAAGTTG GTTGGTGCTT TTGTTTTTGT 
    CCCTTTTGTT TCAAAACTTA TCTTTCAAGT GTGTTTCTTT GTTCGGACAT 
    TTGTTGTAAT GAGTCAACTT CCCACTCAAA TCTGATATCT CTCCGCAAAT 
    GAGTAAATTT ATGCT

    Gene models with high sequence identity

    1. AT1G27950.1 [+] show detail - glycosylphosphatidylinositol-anchored lipid protein transfer 1
      E-value: 0; Score: 99.74

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 0.00068
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.00028
    HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 5.5e-06
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 1.7e-18

    See the detailed result >

    AT1G27950.1

    Model type
    Protein coding
    Short Description
    glycosylphosphatidylinositol-anchored lipid protein transfer 1
    Curator Summary
    Encodes LTPG1, a lipid transfer protein with a predicted GPI (glycosylphosphatidylinositol)-anchor domain. Localized in the plasma membrane. Disruption of the LTPG1 gene causes alterations of cuticular lipid composition, but no significant changes on total wax and cutin monomer loads are seen.
    Computational Description
    glycosylphosphatidylinositol-anchored lipid protein transfer 1 (LTPG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G44290.1); Has 597 Blast hits to 593 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 597; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR