F11808

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic) dark green (PATO:0001249) (Cauline leaf::Color::dark)
	rosette leaf (PO:0000014)	epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	dark green (PATO:0001249) (Stem::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11808

Determination of introduced cDNA(s)

RAFL02-05-B07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-05-B07 - Resource: pda00126

full reading [+] show sequence

CTTCAAAAAA CTCTCCACTC AACTCTCTCT GGTCAGCTGT CTCTTCCCCA 
TTCTCTAGGG TTTTCAAGCT CAACCTCAAG CTCCACTACG ATCTCTTCTT 
CTTCTCTAAT CTCAGTTGAA AGATGCAAGG TGTGATTCGA TCCTTCGTCT 
CCGGTGGAAA TGTTGTGAAA GGCTCTGTGC TGCAACATCT CCGTGTGATT 
AACCCGGCGA TTCAGCCTTC TGTGTTTTGT TCACGCTCTG AATCAACTCA 
ACCTGCACGT ATGGAGGAAT CTGGATTCGA GAGCACAACT ATTTCCGATG 
TCATGAAATC CAAAGGCAAA AGTGCTGATG GATCTTGGCT TTGGTGTACT 
ACTGATGACA CTGTTTATGA TGCTGTTAAA TCCATGACAC AACACAATGT 
TGGTGCCTTG GTGGTTGTGA AACCTGGTGA GCAACAAGCT CTTGCTGGTA 
TCATTACAGA GAGAGATTAT CTACGGAAGA TCATTGTGCA AGGGAGATCA 
TCCAAATCAA CAAAAGTTGG AGACATTATG ACTGAAGAGA ATAAGCTTAT 
CACTGTGACA CCGGAGACCA AGGTCTTGCG TGCTATGCAA CTGATGACAG 
ATAACCGAAT CAGGCATATT CCGGTAATCA AAGACAAGGG CATGATTGGA 
ATGGTGTCCA TAGGAGATGT TGTCCGTGCA GTGGTTCATG AGCATAGAGA 
GGAGCTTCAA CGCCTAAATG CGTATATTCA GGGAGGTTAC TAGATCTTGA 
ATAATGGAAA GAAAAGAGTT CCCTGTTGTG TCGTCTGGTC TTGTGCTGCT 
GAATCTGAAA AGCTTCCAGA TCAGTGTAAA TATGCAGTCC TCGTTGTTAT 
TGTTGTTGTT GTTGTGTTTG ATGTTTTGTG TTGTTTCGTT GTTTAACTTG 
TCAAAACTAA GGCCTTGTGC TGCTTCTCTT CTTGCGCTTA CTTAGCAAGA 
GAATAAAACC AAAAACTCTG ATCTC

Gene models with high sequence identity

AT5G10860.1 [+] show detail - Cystathionine beta-synthase (CBS) family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Cystathionine beta-synthase, core	2.4e-07
HMMPfam	Cystathionine beta-synthase, core	1.4e-12
HMMSmart	Cystathionine beta-synthase, core	0.00024
HMMSmart	Cystathionine beta-synthase, core	4.4e-09
superfamily	CBS-domain	4.8e-15
superfamily	CBS-domain	1.7e-09
ProfileScan	Cystathionine beta-synthase, core	10.844
ProfileScan	Cystathionine beta-synthase, core	13.666
HMMPanther	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED	1.5e-38
HMMPanther	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED	1.5e-38

See the detailed result >

AT5G10860.1

Model type: Protein coding
Short Description: Cystathionine beta-synthase (CBS) family protein
Computational Description: Cystathionine beta-synthase (CBS) family protein; FUNCTIONS IN: cobalt ion binding; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) family protein (TAIR:AT1G47271.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR