F09939

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09939

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09939

Determination of introduced cDNA(s)

  • RAFL05-18-H13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-H13 - Resource: pda01396

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-H13 - full reading 
    GAGAACTCTG CTCTTCTTCT TCTTCCTCCG CCATAGCTAC AATGCTTAGT 
    CTCTCAATCG CTACGCCGGG GACGGCGGCG ATTTTTCGTA GAGGAACTGC 
    TTCGGCGACT TCAACTTCGT CTTCATTCCA TGGTGTCAGA ATCCAGCACC 
    AGGTTTCTGC TCGCGTCCCC GCGGCGGCGA CGATATCGTC GTCGTCTCCT 
    AAACCGTCGG TGGTGATGAT GTCGAAAAGA GAGGCGGAAT TGAAAGAGAT 
    AAGATCGAAG ACGACGGAGC AGTTACAAGA GGAGGTTGTT GACCTTAAAG 
    GTGAGCTCTT TATGCTTCGT CTCCAGAAAT CGGCAAGGAA TGAGTTCAAA 
    TCTAGCGACT TTCGTCGTAT GAAGAAACAA GTTGCTCGGA TGTTGACGGT 
    TAAAAGAGAG AGGGAGATCA AAGAAGGGAT AAAGAAAAGG TTGTCGAGGA 
    AACTTGACAG ACAATGGAAG AAAAGCATAG TACCAAGACC ACCTCCGTCT 
    CTGAAGAAAC TTCAAGAAGA AGAAGCTGCA GAAGAAGCAG CTGAAGCTGC 
    TAAATCTGCT TGAAAAAACC CGCTATTGAT TTATGGTCTC TTCCTTGTTG 
    TTTCCTCGAG ATGTTGTTAA TCTCTGTTAT TTGTTGCTGA ACCATCTTGT 
    ATTTGTTTTT CTTTTGGTGT AAACACTTTC CTTATCAAGT AGTTTACATG 
    AATCCCTTAA AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT5G65220.1 [+] show detail - Ribosomal L29 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Ribosomal protein L29 1.3e-06
    HMMPfam Ribosomal protein L29 1.6e-17
    superfamily Ribosomal protein L29 1.9e-13
    HMMTigr Ribosomal protein L29 5.3e-16

    See the detailed result >

    AT5G65220.1

    Model type
    Protein coding
    Short Description
    Ribosomal L29 family protein
    Computational Description
    Ribosomal L29 family protein ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast stroma, chloroplast, nucleoid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR