F08619

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)
T2
	cauline leaf (PO:0000013)	decreased width (PATO:0000599) (Cauline leaf::Shape::narrow)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08619

Determination of introduced cDNA(s)

RAFL06-71-K24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-71-K24 - Resource: pda03372

full reading [+] show sequence

GCCTACTGCC TAGCCATTAC CCTCTCTCTC TCTTTATAAT AAATAACATC 
ACACATCACT TACATTCACT CTTCACAAAG ATATTATAGA GTGTGAGAGA 
GAGACACTCT TGTTTCATCT TCAACTTCCA CTACCTTTGC AAGATTCTAC 
CTGAGATAGA TGGCGAAGTT CCGACAAATG GGTTCATCAA TCTTCTTCCT 
CTTTCTTATC ATAATCTCAT TATGTTCCGC CCACAAAGAA GCGTTTTCTT 
CAACTGATCT TGTTCAAATG GAGTGCTTGA GAGTCCCACC GTTAGAGTTT 
GCTGAAGCGG CCAAAACCGT CGTCGACGCT ATAACAAAAG CGGTAGCTAT 
AGTGTCCAAG TTCGACAAGA AAGCCGGGAA GTCGCGAGTC TCCAATGCGA 
TTGTTGATTG TGTTGATCTT CTTGATTCTG CCGCCGAAGA GCTTTCTTGG 
ATCATCTCTG CCTCTCAATC CCCCAACGGT AAAGACAATA GCACAGGAGA 
CGTGGGTTCG GATCTAAGGA CATGGATAAG CGCCGCACTT TCTAACCAGG 
ACACATGTCT TGACGGTTTC GAGGGTACTA ATGGAATTAT CAAAAAGATA 
GTGGCCGGTG GTCTTAGCAA GGTTGGTACG ACCGTTCGGA ATTTACTAAC 
GATGGTTCAC TCTCCTCCCT CTAAGCCCAA ACCTAAGCCC ATTAAGGCCC 
AGACAATGAC GAAAGCTCAT AGTGGCTTCA GTAAGTTCCC CTCATGGGTT 
AAACCCGGTG ATCGGAAGTT GTTGCAAACT GATAACATAA CGGTTGCTGA 
CGCGGTTGTA GCCGCAGACG GGACCGGAAA TTTCACGACG ATAAGTGACG 
CGGTGTTGGC TGCACCGGAC TATAGTACCA AAAGATATGT CATACATGTA 
AAAAGAGGTG TGTATGTAGA GAATGTGGAG ATTAAAAAGA AGAAATGGAA 
CATTATGATG GTTGGTGACG GCATCGATGC CACCGTGATC ACGGGTAACC 
GGAGTTTCAT CGACGGCTGG ACTACTTTCC GATCTGCTAC ATTTGGTAAG 
TCCAAATTTA TAATATCTTT CACCTAGTAT TTTTTGTTTT CTTACTATTA 
ATGAAGATTA TGAATTGGTT ATAAAACTAA AAAAAAAAAA AAAA

Gene models with high sequence identity

AT3G43270.1 [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Pectinesterase inhibitor	1.89999859865865e-20
PatternScan	Pectinesterase, active site	0
HMMPfam	Pectinesterase, catalytic	6.79999999999998e-29
HMMTigr	Pectinesterase inhibitor	0.799999996793849
HMMPfam	Pectinesterase inhibitor	4.80000000000001e-19
superfamily	Pectin lyase fold/virulence factor	1.2e-27
Gene3D	Pectin lyase fold	1.50000306971087e-23
superfamily	Pectinesterase inhibitor	1.1e-08

See the detailed result >

AT3G43270.1

Model type: Protein coding
Short Description: Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description: Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase 44 (TAIR:AT4G33220.1); Has 2924 Blast hits to 2864 proteins in 331 species: Archae - 6; Bacteria - 617; Metazoa - 1; Fungi - 199; Plants - 2076; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link: InterPro Scan - TAIR