F08410

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08410

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • dark green (PATO:0001249)
    (Stem::Color::dark)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08410

Determination of introduced cDNA(s)

  • RAFL09-14-J21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-14-J21 - Resource: pda01771

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-14-J21 - full reading
    AAGTTGAAAT TCTGATTAGG GTCTTCCTCG ATTCGCTTTT GGTGAATCAA 
    ATTTCTTTAA TTTCAGTGAA TACGCTTTTG ACAGGAGGAC CATACTAAGT
    CTTGGGAAAA CCCTCTTCAT AGTGGGTTTG ATCTACAATG ATGTATCAGA
    CAATTCCCAC GGCACCAACC ATTCGTGGTG GAACTCCAAC AGAGAGTGGT
    GATTACGTTG TGACTTTGGA TCAGATTCCA CGGTGGAGTG ATGTTGAGCA
    GAGATCATCT TTGGAGGATG AGACAGGAGA TCCAGAACAT TCGAATCCGC
    GCTACGCAAA CCCTTTGGCT TCGTCTTCCG AAGCAGGGAG CAGCGGGAAT
    GGGATGGTAT CTAAGTTTCC TGTTGATCAC GAGATAAACT CTAGAATATA
    CCTTTGGAGA GGGGAACCTT GGAACCTTGA GGTTGATGCT GTTGTAAATT
    CGACAAATGA GAACTTGGAT GAGGCACATA GCAGTCCTGG TCTACATGTG
    GCTGCTGGAC CTGGCCTTGC AGAGCAATGT GCTACATTGG GTGGATGCAG
    GACAGGGATG GCGAAAGTAA CAAATGCCTA TGATCTACCA GCGAGGAGGG
    TTATCCATAC AGTAGGACCC AAGTATGCAG TAAAGTATCA TACAGCTGCT
    GAGAATGCTC TAAGTCACTG CTATAGATCT TGTCTGGAAC TTCTCATAGA
    TAGTGGGCTA CAAAGTATCG CTCTGGGCTG TATATACACA GAAGCCAAAA
    ACTATCCCCG AGAACCAGCT GCTCATGTTG CCATAAGAAC TGTTCGCCGC
    TTTCTAGAGA AGCAAAAGGA TAAAATCAGT GCCGTTGTTT TCTGTACCAC
    CACATCCTCT GATACGGAGA TATACAAACG ATTACTTCCA CTTTACTTTC
    CTCGAGATGA ACATGAGGAA GAGGTTGCCA TATCAAAGCT CCCGGCTGAT
    GTTGGAGATG AAAATGGTGA GACGGTTATA GACGAACGTA AAATCAGAAT
    ACAGGCGCTG CCAAATAAAC CTCCACCCAG ATCTTTTCCA ACTCCACTCG
    AGCGCCCTTC TACTGATCTT ACTTTGTTAC GCAGGAACTC GAATCATCTT
    GATTCGTATT TGGATCCTGC CTTCATGTCC TTGATTAAGG ATCCAGATGA
    AAGGCGCAAA GAACAATGGG AGAAGACTGC ACAAGCACAA AGTGGATTCA
    ATTTTGTTAA ATTGCTAGGA TTTGGTGATC TAGGAGGACC CCCTCTCTCT
    GCTGCAGAGG AATACTCACT TCATTCGCGA TACCTAGCGA AAGCTAATTC
    AATCAACCTT TCCGAGATTG CAGAGATGAA AATTGTCTAT CGTGGTGGTG
    TTGACACCGA GGGTCATCCT GTAATGGTTG TTGTAGGAGC TCACTTTTTG
    CTGCGATGTC TTGATCTGGA GCGTTTTGTA CTTTATGTTA TTAAGGAATT
    TGAACCTGTG ATACAAAAGC CTTATTCGAT TGTCTACTTT CATTCTGCAG
    CATCGTTACA AGTCCAACCA GATTTGGGAT GGATGAAAAG ATTAGAACAG
    ATACTTGGTC GAAAACACCA GCGTAACCTT CAGGCAATCT ATGTTCTTCA
    TCCAACTTTC CACTTGAAGG CTACAATCTT AACGATGCAA TTTTTCGTGG
    ATAATGTGGT ATGGAAGAAA GTTGTATATG CAGACCGACT TCTGCAGCTG
    TTCAAATACG TTCCTCGTGA GCAGCTGACA ATCCCAGACT TTGTTTTCCA
    GCATGATCTT GAAGTTAACG GAGGAAAAGG TCTAATCGTT GACCCAAGAA
    CAAAATACGT TTATCAACGG CCATGAACCA AAATCAAAGA CCGTTACTTT
    ATTCAGTACT TGTATGTTTG CTTGTGAAAT ATTTCTTCAT TCTTTCATGC
    TTATCTTCTC AAGATGATCC TGGGAGCAAA TAAAGTCTTC TTCTTCTTCT
    AATGTAATCT AAAGTTTGAA TCTTTTTGTT TATAAATCCA TTTTCTCAGC
    ACAC

    Gene models with high sequence identity

    1. AT1G69340.1 [+] show detail - appr-1-p processing enzyme family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Appr-1-p processing 3.3e-08
    HMMSmart Cellular retinaldehyde-binding/triple function, C-terminal 6.4e-07
    HMMPanther GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATE 0
    HMMPanther GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATE 0
    Gene3D no description 7.8e-44
    ProfileScan Appr-1-p processing 22.212
    HMMPfam Appr-1-p processing 6.6e-24
    superfamily Macro domain-like 1e-40
    superfamily Cellular retinaldehyde-binding/triple function, C-terminal 2.2e-14

    See the detailed result >

    AT1G69340.1

    Model type
    Protein coding
    Short Description
    appr-1-p processing enzyme family protein
    Computational Description
    appr-1-p processing enzyme family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Appr-1-p processing (InterPro:IPR002589); BEST Arabidopsis thaliana protein match is: appr-1-p processing enzyme family protein (TAIR:AT2G40600.1); Has 3597 Blast hits to 3538 proteins in 1210 species: Archae - 64; Bacteria - 1971; Metazoa - 984; Fungi - 140; Plants - 224; Viruses - 8; Other Eukaryotes - 206 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR