F08211

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	stem (PO:0009047)	desaturated green (PATO:0001272) (Stem::Color::pale)
T2
	cauline leaf (PO:0000013)	decreased width (PATO:0000599) (Cauline leaf::Shape::narrow) hyponastic (PATO:0002329) (Cauline leaf::Shape::hyponastic) desaturated green (PATO:0001272) (Cauline leaf::Color::pale) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	desaturated green (PATO:0001272) (Rosette leaf::Color::pale) dark green (PATO:0001249) (Rosette leaf::Color::dark) abnormal (PATO:0000460) (Rosette leaf::Others)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	desaturated green (PATO:0001272) (Stem::Color::pale) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Spirality::others

Original: F08211

Determination of introduced cDNA(s)

RAFL06-10-N03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-N03 - Resource: pda02992

full reading [+] show sequence

AAAACAAACA AAAAATCTAG TGTTCGGCTC TAACACGCTC GACGACCATG 
GCGGTCTCGT TTAATACAAC GCTTCACCAG CCTTCTCTGA GTCCGAGCTG 
TAGCATCAAG CTTTATTCTG GGTTAAAGCC TCAATCTGCA AGCTTTTTGG 
CAAGTGGGTA TCAGAATTTG AACAAGGAGT TCTATGGAAG AGTTTATAAG 
AGTCTGCAAT CTGGGACTGG GAAAGCGAGC AGGTCACGGG TAAAGATGAT 
GCCAATAGGA ACACCGAGAG TACCCTACAG AAACCGAGAA GAAGGGACTT 
GGCAATGGGT TGATATATGG AATGCCCTTT ATCGAGAGCG TGTAATCTTC 
ATTGGACAAA ACATTGATGA AGAGTTTAGC AACCAGATAT TAGCAACCAT 
GTTGTACCTT GATACTCTTG ATGACTCGAG GAGGATTTAT ATGTACCTAA 
ATGGTCCGGG TGGTGATCTT ACTCCAAGTC TAGCCATCTA TGATACAATG 
AAGAGCTTGA AAAGTCCGGT TGGGACACAT TGCGTTGGGC TTGCTTACAA 
CCTTGCAGGT TTTCTTCTTG CGGCTGGAGA AAAGGGTCAC CGATTTGCGA 
TGCCATTATC AAGAATCGCC CTCCAGTCAC CAGCTGGTGC AGCCCGTGGT 
CAGGCTGATG ATATCCAAAA TGAAGCAAAA GAGCTTTCAA GGATAAGAGA 
CTACCTCTTC AATGAACTAG CCAAGAATAC AGGCCAGCCT GCGGAAAGGG 
TCTTCAAAGA CTTGAGCCGG GTGAAAAGGT TCAATGCAGA GGAAGCAATC 
GAGTATGGAC TTATTGATAA GATTGTTAGA CCACCGCGCA TCAAAGAAGA 
CGCTCCTCGC CAAGACGAAA GCGCAGGGCT AGGCTAGTCT TTTTGTTTGT 
TTGTTATGTC AAAAGTTTTA ATCTTTATGT TATTGTGATT GTTACCTAAT 
AAAATCACTG ATTATTGT

Gene models with high sequence identity

AT1G12410.1 [+] show detail - CLP protease proteolytic subunit 2
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Peptidase S14, ClpP	1.4e-62
FPrintScan	Peptidase S14, ClpP	4.4e-33
FPrintScan	Peptidase S14, ClpP	4.4e-33
FPrintScan	Peptidase S14, ClpP	4.4e-33
FPrintScan	Peptidase S14, ClpP	4.4e-33
FPrintScan	Peptidase S14, ClpP	4.4e-33
superfamily	ClpP/crotonase	2.1e-43
HMMPanther	Peptidase S14, ClpP	9.1e-66
Gene3D	no description	3.2e-55
HAMAP	CLPP_MF_00444	32.857

See the detailed result >

AT1G12410.1

Model type: Protein coding
Short Description: CLP protease proteolytic subunit 2
Curator Summary: Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
Computational Description: CLP protease proteolytic subunit 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: plastid-encoded CLP P (TAIR:ATCG00670.1); Has 13082 Blast hits to 13064 proteins in 2999 species: Archae - 2; Bacteria - 8275; Metazoa - 145; Fungi - 81; Plants - 1076; Viruses - 67; Other Eukaryotes - 3436 (source: NCBI BLink).
Link: InterPro Scan - TAIR