F07103

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07103

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07103

Determination of introduced cDNA(s)

  • RAFL09-58-J22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-58-J22 - Resource: pda06555

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-58-J22 - full reading 
    AAATTACAAT GGAGCACAGA AATGTAAGAG GGAACGGCAT AGACATCCAC 
    GTAGCAATCC AAGGTCCCTC CGATGGTACT ATAGTCCTCC TCCTCCATGG 
    TTTCCCTGAG CTTTGGTACT CATGGCGCCA CCAGATCTCC GGACTCGCCG 
    CTCGTGGCTA CCGTGCCGTC GCTCCTGACC TACGTGGTTA CGGTGACTCC 
    GATGCTCCGG CTGAGATTTC TTCCTTTACA TGCTTTAACA TAGTAGGTGA 
    CTTAGTCGCC GTCATATCCA CCTTAATCAA GGAGGATAAG AAGGTGTTTG 
    TGGTTGGACA TGATTGGGGA GCTCTCATCG CTTGGTACCT TTGTCTTTTT 
    AGACCAGATA AAGTCAAAGC TTTGGTTAAC CTTAGTGTTC CGTTGTCTTT 
    CTGGCCAACC GATCCATCGG TGAAGCCCGT TGATCGCATG CGTGCTGTAT 
    ACGGCAATGA TTACTATGTC TGCAGGTTTC AGGAAGTTGG AGATATAGAA 
    GCTGAGATTG CAGAGGTTGG AACAGAGAGA GTCATGAAGA GACTACTCAC 
    TTATAGAACT CCTGGACCGC TTATTATACC GAAGGACAAA AGTTTTTGGG 
    GATCCAAAGG CGAAACTATA CCACTACCGT CTTGGCTAAC GGAGGAAGAT 
    GTTGCTTACT TCGTCAGCAA GTTTAAAGAG AAAGGCTTCT GTGGTCCAGT 
    CAATTACTAC CGTAACTTCA ACAGGAACAA TGAGTTGTTG GGTCCATGGG 
    TGGGAAGCAA AATCCAGGTT CCTACAAAGT TTGTGATAGG GGAGCTTGAT 
    CTGGTCTACT ATATGCCTGG TGTGAAGGAA TATATACATG GTCCCCAGTT 
    TAAGGAAGAT GTGCCTTTGA TTGAAGAGCC TGTGGTCATG GAAGGAGTGG 
    CTCACTTTCT TAACCAAGAG AAGCCTCAAG AGATTCTCCA AATAATCCTT 
    GATTTCATCT CCACATTCTA ATATTTCGTT CCCTTATAAA ACACTCTTGT 
    AAGTTCCATA ATAAGTTGAA TTTTGAGGAT GTATCTTCAT GTATGGAAAA 
    AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT2G26750.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther EPOXIDE HYDROLASE 3.2e-118
    HMMPanther ALPHA/BETA HYDROLASE RELATED 3.2e-118
    FPrintScan Epoxide hydrolase-like 2.8e-49
    FPrintScan Epoxide hydrolase-like 2.8e-49
    FPrintScan Epoxide hydrolase-like 2.8e-49
    FPrintScan Epoxide hydrolase-like 2.8e-49
    FPrintScan Epoxide hydrolase-like 2.8e-49
    FPrintScan Epoxide hydrolase-like 2.8e-49
    FPrintScan ABHYDROLASE 1.7e-05
    FPrintScan ABHYDROLASE 1.7e-05
    FPrintScan ABHYDROLASE 1.7e-05
    superfamily alpha/beta-Hydrolases 4.8e-59
    Gene3D no description 2.4e-56
    HMMPfam Alpha/beta hydrolase fold-1 1.3e-13

    See the detailed result >

    AT2G26750.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: epoxide hydrolase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: soluble epoxide hydrolase (TAIR:AT2G26740.1); Has 13644 Blast hits to 13615 proteins in 1561 species: Archae - 73; Bacteria - 9500; Metazoa - 505; Fungi - 453; Plants - 528; Viruses - 3; Other Eukaryotes - 2582 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR