F07014

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07014

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • variegated (PATO:0000335)
    (Rosette leaf::Color::variegated)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07014

Determination of introduced cDNA(s)

  • RAFL09-31-D16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-31-D16 - Resource: pda05835

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-31-D16 - full reading 
    AGTGCTCGAC TATACATATA GCCAAAGAAG AGCAGAAAAA TCAAAGTCGT 
    GAGTTCAGAA GCTATAACAA AATTTCTAAG AAAAAGAAAG ATAAGAAAAT 
    GGAGAATTTT ATGGTAGAGA TGGCCAAGAC CATTTCGTGG ATAGTTGTAA 
    TAGGAGTGTT AGGTTTAGGG ATTCGTGTTT ACGGTAAAGT GATGGCGGAG 
    CAATGGAGGA TGCGGAGGAA GCTGACGATG CAGGGCGTGA AGGGTCCTCC 
    GCCGTCGCTA TTTCGTGGAA ACGTGCCGGA GATGCAAAAA ATCCAGTCAC 
    AAATAATGAG TAACTCTAAA CACTACTCCG GTGATAATAT CATCGCCCAT 
    GACTACACTT CTTCTCTCTT TCCATATCTC GACCACTGGC GAAAACAATA 
    CGGGAGAGTG TACACGTATT CGACGGGGGT GAAGCAACAC TTGTACATGA 
    ACCACCCGGA GTTGGTGAAA GAACTTAACC AAGCCAACAC TCTTAACCTT 
    GGCAAAGTCT CTTACGTCAC CAAACGCCTT AAATCCATTC TTGGCCGTGG 
    TGTTATCACC TCTAATGGGC CTCATTGGGC CCATCAACGT CGTATCATTG 
    CACCTGAGTT TTTCCTCGAC AAAGTCAAGG GAATGGTGGG ATTGGTGGTG 
    GAATCAGCGA TGCCAATGCT GAGTAAATGG GAAGAGATGA TGAAAAGAGA 
    AGGAGAAATG GTGTGTGACA TAATTGTAGA CGAAGACCTA AGAGCTGCCT 
    CTGCTGACGT TATCTCTAGA GCTTGCTTTG GGAGCTCTTT CTCCAAAGGC 
    AAAGAGATCT TCTCTAAGCT TAGATGTCTT CAAAAGGCCA TCACTCACAA 
    CAACATCCTC TTCAGCCTCA ATGGCTTCAC TGATGTTGTG TTCGGGACTA 
    AGAAGCATGG GAACGGGAAG ATTGATGAGC TAGAGAGACA CATTGAGTCT 
    TTGATATGGG AAACCGTTAA AGAAAGAGAA AGGGAATGTG TGGGAGATCA 
    CAAGAAGGAT CTAATGCAGT TGATACTAGA AGGGGCCAGG AGTAGTTGTG 
    ATGGCAACTT GGAGGACAAG ACACAATCTT ACAAAAGTTT CGTGGTGGAC 
    AATTGCAAGA GCATCTATTT TGCCGGGCAT GAGACCAGTG CGGTTGCTGT 
    CTCTTGGTGT CTTATGCTCC TCGCTCTCAA CCCTTCTTGG CAAACTCGTA 
    TCCGCGATGA AGTCTTTCTT CATTGCAAGA ACGGTATACC TGACGCAGAC 
    TCTATTTCCA ACCTCAAAAC GGTGACAATG GTTATCCAGG AAACGTTGAG 
    GCTATACCCA CCAGCAGCAT TCGTGTCGAG AGAAGCCCTT GAGGACACAA 
    AACTCGGAAA CCTCGTGGTG CCAAAGGGAG TGTGCATCTG GACGTTGATC 
    CCTACATTGC ACAGAGACCC TGAGATATGG GGAGCTGACG CAAATGAATT 
    CAATCCAGAA AGATTTAGCG AAGGAGTCTC TAAAGCCTGC AAACACCCTC 
    AGTCATTCGT CCCATTTGGC TTAGGGACAA GGTTGTGTTT AGGAAAGAAT 
    TTTGGTATGA TGGAGCTCAA GGTTCTTGTC TCACTTATTG TGTCAAGGTT 
    TAGCTTTACT CTCTCTCCCA CATATCAACA CTCTCCGGTG TTTAGAATGC 
    TTGTAGAGCC TCAACATGGT GTTGTCATTA GAGTTCTGAG ACAATAAGAT 
    ATGTCGTTAG CTTATGGTTT TAGTTTTAAT CCTGTGTAAT AATAAGATAT 
    TATTACACTA TAGTACTATA ATAGTATTTT CTTTGGTACC

    Gene models with high sequence identity

    1. AT5G24910.1 [+] show detail - cytochrome P450, family 714, subfamily A, polypeptide 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cytochrome P450 6.4e-98
    PatternScan Cytochrome P450, conserved site 0
    HMMPanther CYTOCHROME P450, SUBFAMILY 72 1.2e-199
    HMMPanther Cytochrome P450 1.2e-199
    Gene3D Cytochrome P450 1.3e-91
    HMMPfam Cytochrome P450 4.8e-78
    FPrintScan Cytochrome P450, E-class, group I 5e-18
    FPrintScan Cytochrome P450, E-class, group I 5e-18
    FPrintScan Cytochrome P450, E-class, group I 5e-18
    FPrintScan Cytochrome P450, E-class, group I 5e-18
    FPrintScan Cytochrome P450, E-class, group I 5e-18
    FPrintScan Cytochrome P450, E-class, group I 5e-18
    FPrintScan Cytochrome P450, C-terminal 6.8e-14
    FPrintScan Cytochrome P450, C-terminal 6.8e-14
    FPrintScan Cytochrome P450, C-terminal 6.8e-14
    FPrintScan Cytochrome P450, C-terminal 6.8e-14

    See the detailed result >

    AT5G24910.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 714, subfamily A, polypeptide 1
    Curator Summary
    member of CYP714A
    Computational Description
    "cytochrome P450, family 714, subfamily A, polypeptide 1" (CYP714A1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 714, subfamily A, polypeptide 2 (TAIR:AT5G24900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR