F06916

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	variegated (PATO:0000335) (Rosette leaf::Color::variegated)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic) desaturated green (PATO:0001272) (Cauline leaf::Color::pale) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	desaturated green (PATO:0001272) (Rosette leaf::Color::pale) increased width (PATO:0000600) (Rosette leaf::Shape::wide) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	stem (PO:0009047)	desaturated green (PATO:0001272) (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06916

Determination of introduced cDNA(s)

RAFL05-08-N01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-08-N01 - Resource: pda00918

full reading [+] show sequence

GGGAAAGAGC AGAAGAAATT TGCAGAAGAG AGAAAAACAA AAATGGCGGT 
TCTTTGCTCG TCTTCGACGG TGATACTCTC TTCTTCTTCC GTGAAATCCT 
CCGGAAGTGA GAGAAAGTCT CCGTTTTTAG GGTTCTCTTT AACGGCTATC 
TCGAAGCCGT CGGTACGAGT CGGCATTTAT GCGAATTCGA AAAGAGGATT 
GCAAGTGAAG TGTGAAGCTG AGCCGACGAC GACGACTTCT CTTGTTCCGG 
CGAATCAACG ATGGATGTTC GACGAAGAAG AAGCTAATGG CCCTGACATC 
TGGAACACGA CATGGTATCC AAAAGCTTCA GACCATGTGA ACACGGACAA 
GCCCTGGTTT GTGGTTGATG CAACTGACAA AATTCTTGGT AGATTGGCAT 
CGACAATTGC TAATCACATC CGTGGGAAGA ATCTTGCCTC TTACACTCCT 
AGTGTCGACA TGGGAGCTTT TGTGATTGTG GTGAATGCTG AGAAAGTTGC 
TGTATCTGGA AAGAAGCGTA ACCAAAAGCT GTACAGGAGG CATTCAGGAC 
GACCTGGTGG TATGACAGTA GAGACATTTG ATCAATTGCA GCAGAGAATT 
CCTGAAAGAA TCGTTGAGCA TGCTGTTCGT GGAATGCTTC CAAAGGGACG 
GCTTGGGAGA GCTCTGTTCA ATCACCTGAA GGTGTACAAA GGCCCTGACC 
ATCCTCACGA GGCCCAGAAA CCGCTTGATC TGCCTATCAG GGACAAGAGA 
ATACAGCTGC AAAAATAGAA GCTCCACCAC TGTTCCATTA TCGCCAAGCG 
CAGAGAGTTT TTTCTTCTCA GGTTTCTGTA GTTTCTTCAT CCCAAAACCA 
GAGGAGGCTT TACAGATTCT TGTTTTCGCT TCTATCAACT CTGTTATGCT 
ACAAAACTTT CTAATTTGAA ATATTTCTCG TTATTTTTTT TTGCCAAAAA 
AAAAAAAAAA A

Gene models with high sequence identity

AT1G78630.1 [+] show detail - Ribosomal protein L13 family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Ribosomal protein L13, bacterial-type	6.9e-76
superfamily	Ribosomal protein L13	1.3e-43
PatternScan	Ribosomal protein L13	0
HMMPfam	Ribosomal protein L13	5.1e-50
HMMPanther	Ribosomal protein L13, bacterial-type	9.7e-116
HMMPanther	Ribosomal protein L13	9.7e-116
Gene3D	Ribosomal protein L13	4.4e-39

See the detailed result >

AT1G78630.1

Model type: Protein coding
Short Description: Ribosomal protein L13 family protein
Computational Description: embryo defective 1473 (emb1473); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: thylakoid, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT3G01790.2); Has 8725 Blast hits to 8725 proteins in 2839 species: Archae - 248; Bacteria - 5258; Metazoa - 358; Fungi - 293; Plants - 251; Viruses - 0; Other Eukaryotes - 2317 (source: NCBI BLink).
Link: InterPro Scan - TAIR