F06732

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06732

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06732

Determination of introduced cDNA(s)

  • RAFL11-10-L18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-10-L18 - Resource: pda09196

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-10-L18 - full reading 
    TGAGGGTTTC AAGTGAAAAG AGTAATAGCG CGGCGGAGCC ATGGTTCTCA 
    AGACTGAGCT TTGCCGATTC AGTGGCCAGA AAATTTACCC TGGTAGAGGG 
    ATCAGATTTA TCCGATCGGA CTCTCAGGTG TTTTTGTTTC TCAACTCCAA 
    ATGTAAGAGG TATTTCCACA ACAAGTTGAA GCCATCTAAG CTTTGCTGGA 
    CTGCTATGTA CCGAAAGCAG CACAAGAAGG ACGCAGCACA AGAGGCTGTG 
    AAGAGAAGGA GACGTGCAAC TAAGAAGCCT TACTCAAGGT CGATTGTCGG 
    TGCTACTTTG GAGGTTATTC AGAAGAAGCG AGCAGAGAAG CCTGAAGTTC 
    GTGATGCCGC TAGAGAAGCT GCCCTACGTG AGATCAAGGA GAGAATCAAG 
    AAGACCAAGG ACGAGAAGAA GGCAAAGAAG GTCGAGTATG CATCAAAGCA 
    ACAGAAGTCA CAAGTGAAGG GAAATATCCC CAAGAGTGCT GCACCCAAGG 
    CTGCTAAGAT GGGTGGTGGT GGAGGCAGAC GTTGAATGGA GCTATAGAGT 
    AGCCCACTCT TCTCTCTTCA CTTATCTTTC TTTCTTGTTT TGACATTGTT 
    TTGTTTTGTC AGCCATTTTT TAGTTTTGCA CCAGATCTAA TATATTCAGT 
    TTATGAAAAC TTTTTGTTTG GTAT

    Gene models with high sequence identity

    1. AT2G36620.1 [+] show detail - ribosomal protein L24
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Ribosomal protein L24e 5.5e-20
    PatternScan Ribosomal protein L24e 0
    superfamily Glucocorticoid receptor-like (DNA-binding dom 2.3e-18
    HMMPanther 60S RIBOSOMAL PROTEIN L24 1.8e-80
    HMMPanther Ribosomal protein L24e 1.8e-80
    HMMSmart TRASH 3.8e-07
    Coil coiled-coil 0
    HMMPfam Ribosomal protein L24e 6.4e-37

    See the detailed result >

    AT2G36620.1

    Model type
    Protein coding
    Short Description
    ribosomal protein L24
    Curator Summary
    RPL24A encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B (AT3G53020).
    Computational Description
    ribosomal protein L24 (RPL24A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988); BEST Arabidopsis thaliana protein match is: Ribosomal protein L24e family protein (TAIR:AT3G53020.1); Has 1480 Blast hits to 1465 proteins in 352 species: Archae - 106; Bacteria - 37; Metazoa - 463; Fungi - 306; Plants - 338; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR