F05622

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05622

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05622

Determination of introduced cDNA(s)

  • RAFL06-13-I05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-13-I05 - Resource: pda03161

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-13-I05 - full reading 
    AGAGCTCTCT CTCAGTCGAA AACAATGGCG TCTTCTTCAG CGACGCTCTC 
    TCTCTGCTCT ACTTTCTCTG CTCATTGCAA TGTCAATTCT CGCCGTTCTA 
    GCACTATCCT CTGTTCTCTC TCTAAACCTT CGCTTAATTT GGCTAAACCT 
    CTGACTGGAT TTCTTTCTCC TTCCACTGCG TCGACGTCTC GAACCGCATT 
    CACCGTCGCT CCGAAATTCG CGGAATCAGT CGTCGAAGCT GAACCGGAGA 
    CTACCGATAT CGAAGCTGTG GTGGTTTCCG ATGTTTCGGA GGTTACTGAG 
    GAAAAAGCTA AACGAGAAGA GATTTTCGCT GTTATTATGG TTGGTGGACG 
    CCAATACATA GTGTTTCCAG GGAGATATCT CTACACTCAG AGGCTAAAAG 
    ATGCAAATGT TGATGACCAG ATTGTTCTCA ACAAAGTGTT GCTTGTTGGA 
    ACAAAGACAC ACACTTACAT TGGCAAGCCG GTTGTGACCA ATGCCACTGT 
    ACATGCTGTT GTGGAAAGTC AAGGTTTGAA TGATAAAGTG GTAGTCTTCA 
    AGTACAAGCC TAAGAAGAAG TACCGTAGAA ATATCGGTCA CAGACAGCCG 
    AATACGAGGA TTAGGATTAC CGGAATCACA GGGTATGAAG AGTATCCAGC 
    CTCGCCCAAT GTTGCAGTTG GAGAAGTAAA TCTTTGACAC AAAATGTTTC 
    TTGAATGTTA AAATTTTTCT GATCTTCTCT ATGTAATTTT GTAAGGACCC 
    TGGTCATTTC ATTTCTGCTG AGATTCCTTT TATTAATATG TACCTTTTGC 
    C

    Gene models with high sequence identity

    1. AT1G35680.1 [+] show detail - Ribosomal protein L21
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L21, conserved site 0
    HMMTigr Ribosomal protein L21 2e-32
    HMMPfam Ribosomal protein L21 1.3e-31
    HAMAP Ribosomal protein L21 22.652
    HMMPanther Ribosomal protein L21 2.3e-32

    See the detailed result >

    AT1G35680.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L21
    Computational Description
    Ribosomal protein L21; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to cold, translation; LOCATED IN: ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L21, conserved site (InterPro:IPR018258), Ribosomal protein L21 (InterPro:IPR001787); BEST Arabidopsis thaliana protein match is: Ribosomal protein L21 (TAIR:AT4G30930.1); Has 7103 Blast hits to 7101 proteins in 2544 species: Archae - 0; Bacteria - 5138; Metazoa - 96; Fungi - 4; Plants - 134; Viruses - 0; Other Eukaryotes - 1731 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR