F05420

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05420

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05420

Determination of introduced cDNA(s)

  • RAFL06-08-J12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-08-J12 - Resource: pda12249

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-08-J12 - full reading 
    AAAAAAAAAA AAGATAAATC CAGAAAAAAA TTTACAAAAT AAAAAAATAA 
    AAATCTCTAT CTTCTTCTTC GTCTCTTCTC ATCCTCCTCT CAAGCTCCAA 
    TGGCGAGAGT TCTAGTCTCG TCTCCATCTT CATTCTTCGG TTCACCGTTG 
    ATTAAACCGT CGTCATCTCT CCGTCACAGT GGAGTAGGAG GAGGAGGAAC 
    CGCTCAATTT CTTCCATACC GGAGTAATAA TAACAAACTC TTCACTACTT 
    CAACCACCGT ACGATTCAGC TTAAACGAGA TTCCTCCTTT CCATGGCTTG 
    GATTCATCTG TAGACATCGG AGCGATTTTC ACCAGAGCTG AATCTCTTCT 
    CTATACAATA GCTGACGCCG CCGTTGTTGG TGCTGATTCC GTCGTAACTA 
    CTGATTCATC CGCCGTGCAG AAGAGTGGTG GTTGGTTTGG TTTTATCTCC 
    GATGCTATGG AATTGGTTCT TAAGATTTTG AAGGATGGAT TATCAGCGGT 
    TCATGTACCT TATGCTTATG GATTTGCGAT TATCTTGCTT ACGATTATCG 
    TCAAAGCAGC GACGTATCCT TTGACTAAGC AACAGGTTGA ATCAACACTA 
    GCGATGCAAA ATCTTCAACC GAAAATCAAA GCGATTCAAC AACGTTACGC 
    AGGAAATCAG GAGAGGATAC AACTAGAGAC ATCGCGATTG TATAAACAAG 
    CTGGTGTTAA TCCGTTGGCA GGTTGCTTAC CAACTTTAGC AACCATACCA 
    GTTTGGATTG GTTTATACCA AGCTCTCTCT AACGTGGCCA ACGAGGGATT 
    GTTTACAGAA GGTTTCTTTT GGATTCCATC TCTGGGTGGA CCAACATCTA 
    TAGCTGCTCG GCAGAGTGGA TCCGGCATTT CGTGGCTTTT TCCGTTTGTG 
    GACGGGCATC CACCATTGGG ATGGTATGAC ACTGTAGCTT ATCTTGTTCT 
    ACCTGTTCTA CTTATTGCCT CCCAGTATGT GTCAATGGAA ATTATGAAGC 
    CTCCTCAAAC TGATGATCCT GCACAGAAGA ATACGCTTCT TGTTTTCAAG 
    TTTCTTCCAC TCATGATCGG TTACTTTGCA TTGTCTGTCC CATCAGGACT 
    ATCTATTTAC TGGCTCACAA ATAATGTACT TAGTACCGCC CAACAAGTAT 
    ATCTGCGTAA ACTAGGTGGT GCAAAGCCAA ATATGGATGA AAACGCAAGC 
    AAAATAATAA GTGCGGGACG AGCAAAGAGA TCTATTGCTC AGCCTGACGA 
    TGCTGGCGAA AGATTTAGAC AATTAAAAGA GCAAGAGAAG CGCAGCAAGA 
    AGAACAAGGC GGTTGCGAAA GATACAGTTG AATTGGTAGA AGAATCTCAG 
    TCTGAATCAG AAGAAGGGTC TGATGATGAG GAAGAAGAGG CTCGTGAAGG 
    AGCGTTAGCT TCGAGCACAA CAAGCAAGCC GCTTCCTGAG GTTGGCCAAC 
    GAAGAAGCAA AAGATCGAAG CGGAAACGCA CTGTATAGAA CCAAAGCAAA 
    CGAAATTGCA AGTAAGGAAG AGAAAAGAGA GAGATTTGAA TCTTGTTCCT 
    TAGTTTGATC TTTTGATATA TATTTGCATA CACCATGTCC GGTAATTATC 
    TAATATTAGG GCACAAAAAG GTCATTCTAA AGTTAAAAGC AGTAGTTGAT 
    CAAAGTAAAT TGTTTATGTG ATTCATCTTA TTATAAATGT ATTAACGTAA 
    ATGTGTGTAC TATTATGACT TTTCAACATG CCCGCTTCAG TTTTGTTAC

    Gene models with high sequence identity

    1. AT2G28800.1 [+] show detail - 63 kDa inner membrane family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther INNER MEMBRANE ALBINO3-LIKE PROTEIN 1, 2, CHL 3.9e-197
    HMMPanther Membrane insertion protein, OxaA/YidC 3.9e-197
    HMMPfam Membrane insertion protein, OxaA/YidC 2.1e-59
    HMMTigr Membrane insertion protein, OxaA/YidC, core 2.5e-74

    See the detailed result >

    AT2G28800.1

    Model type
    Protein coding
    Short Description
    63 kDa inner membrane family protein
    Curator Summary
    member of Chloroplast membrane protein ALBINO3 family. Similar to pea PPF1 and may play a role in plant senescence.
    Computational Description
    ALBINO 3 (ALB3); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein import into chloroplast thylakoid membrane, thylakoid membrane organization, regulation of cell aging; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Membrane insertion protein, OxaA/YidC (InterPro:IPR001708), Membrane insertion protein, OxaA/YidC, core (InterPro:IPR020001); BEST Arabidopsis thaliana protein match is: OxaA/YidC-like membrane insertion protein (TAIR:AT1G24490.1); Has 8837 Blast hits to 8795 proteins in 2578 species: Archae - 0; Bacteria - 5819; Metazoa - 151; Fungi - 71; Plants - 148; Viruses - 0; Other Eukaryotes - 2648 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR