F01806

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01806

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01806

Determination of introduced cDNA(s)

  • RAFL06-87-F06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-87-F06 - Resource: pda07748

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-87-F06 - full reading 
    GTGTGAATCT CTCATCGTTC TCTCAAATTT CGTGTTTTTG TAACCGGACG 
    GAGAACCTTT CACGATGTCT GCAAACCAGG AGGAAGACAA GAAGCCAGGA 
    GACGGAGGAG CTCACATCAA TCTCAAAGTC AAGGGACAGG ATGGAAACGA 
    GGTTTTCTTT AGGATCAAGA GAAGCACTCA GCTCAAGAAG CTGATGAATG 
    CTTACTGTGA CCGGCAATCT GTGGACATGA ACTCCATTGC TTTCTTGTTT 
    GATGGGCGTC GTCTTCGTGC TGAGCAAACT CCCGATGAGC TTGACATGGA 
    GGATGGTGAT GAGATCGATG CGATGCTCCA TCAGACTGGT GGCAGCGGTG 
    GTGGTGCTAC GGCCTGACAC TTCGTCCAGG TTTAGGGCTT GTGTGTGATA 
    TGAATGGTTA AGGAGTAATC GGCATTAGGA TTTGCAGACT TGTTTTTTTA 
    TCGTGACCAT TCTCTTTAGA AACTAAGTTA TTATGGTCAC GAAGGTTAAA 
    GAACCCTTTG GTTGATTTTT TGTCTTGTTC GTTTGGTATC GGATCCTATG 
    ATACTACTAT TTCGGCTTAA AGGTGTTATT AACC

    Gene models with high sequence identity

    1. AT4G26840.1 [+] show detail - small ubiquitin-like modifier 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 5.9e-33
    HMMPfam Rad60-SLD 4e-26
    superfamily Ubiquitin-like 9.3e-25
    ProfileScan Ubiquitin supergroup 16.385
    HMMPanther UBIQUITIN-LIKE PROTEIN SUMO/SMT3-RELATED 1.9e-47
    HMMSmart Ubiquitin 1.7e-15

    See the detailed result >

    AT4G26840.1

    Model type
    Protein coding
    Short Description
    small ubiquitin-like modifier 1
    Curator Summary
    Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.
    Computational Description
    small ubiquitin-like modifier 1 (SUMO1); CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: small ubiquitin-like modifier 2 (TAIR:AT5G55160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR