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ET13601

CSHL Arabidopsis genetrap mutant lines

Original: ET13601

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13601

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24039837 [Map]; Strand: c
      • AT5G59660.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon17 (CDS)
      • AT5G59662.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13601 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACTTCAAT 
    CGTTGATAGC TGGTGAGAAA AGGTCTCACC GCCGGGAACT GCTGATGGTG 
    AAGAACCGCT CTCTTTCTCC TCGACGGGAG GGTTCTCCGT CCTAGACCAC 
    CGGATATTAT CATTCTCATT CGACGACTCG CCGAAGCCGG CTGAGATGGA 
    TGAAAGACCT AGATTTCTCT CGGACTCAGT GCCCTGTGGA TTATCCAAAC 
    AGGTTTTTGC TTTGACATAG CATCATGAAT TCATATCTTT TGGTGTGATT 
    GATAGTTTCT TTGGCAAGTA AGATGTGCAT ATTGTCTGAA TTACAAGAAA 
    CTACTATTGC ACAACAAAGT GTGACATTGT CCTAAATCAA CATCTCTAAA 
    CATGGTTGTG ATCATTTTTT TACCCGACAT AATTAGGGCT AATATACTCT 
    AGCTGAATTT AGAGACTTAC AATTTGGTGA GAGCATTCAA ACAAACGAAA 
    ATGACAGTCT TGTTGGACTC TTCTTATATA ATTGATTCAT CCATTGACTT 
    GTCAAAAGTC TTTCTTTTGT GAATGATTTG GGTTTTTGGT TATTTATTTG 
    TTGTTTATCT TTAGACCAAG ATTTCTCTCA GATTCGCAGC CCTATGGATT 
    AATCAAACAG GTTTTACTGA GACATTGCGC TAAAATTTCT T

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET13601 - 5-prime edge 
    TACTTTCTCC CTGGCATTGA GTGGTGGAAT CGCAACCATT CACAAAACTG 
    TGAAACGAAA TCTTTAGGAA CGCATATTGA GTGAGGAATA TATGCCATTG 
    GGTTTGGCCC TTTGAGACCT CTTCATCGGC GATTAGCACT GATTTGAATT 
    TTGAGAACGC GATCAACGAG GCTGGCGTTT TAAACGCAAC GGTCAGTATA 
    TTTTGCTACA AGGATGCAAA AATAACAGGA AGCTTAGTTT TGGGCCAGAA 
    TTGATTTTTT CGCGGCCCAT TATCTAGAAC GAATTTGGAT TCATTATCCA 
    ATCACCTGTC CTCACTTTCT CCTTCACCTC GACGATNNNN AGTTTANCTA 
    AAGTGATTAG CCTAATTATT TTGTTTTAAG AGTGAGATAA GTGAATAAGA 
    AATCACAACC CCCACTCTAT TTCTTTACTT CTAGAGTATT TGATTTGGGA 
    CAATACATAT GTCGCATTTG GTGAATTAGT ACATTTGTTT AGTTTCTTGG 
    TCACACAATA TCCATCTTAC TTTCCAAACA AGCAATGTTC CCTATCTAGC 
    GAGAATGACT ATGCCATGTT

AT5G59660.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G59670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59662.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G59660
Link
InterPro Scan - TAIR