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ET11360

CSHL Arabidopsis genetrap mutant lines

Original: ET11360

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET11360

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11424474 [Map]; Strand: w
      • AT1G31835.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -790; Region: promoter
      • AT1G31840.2 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G31840.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET11360 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATCT 
    ACAACAACAT TCCATCAAAA ACTTGCAAAC ATCAGCATCC AATGACCTAT 
    CCCTAATCGA ACCCAGAACG TTGAAATCCT TCCCACGATT GGTGATCATT 
    TCATCGAACA CCTTATCTGC AACATCGAAC ATCCCATTTC GGATCAAAAC 
    ATGAGCAATG GTATAGAAAG AAGGATCCTT TCCAGATATC TCTGCCCATC 
    GAAAGTATTC TAGCGCAGAA TTTGGTTCTG ATTCAAGCGA AAGAAGGACC 
    AAATTCGTCT CCTGTCGTTG CAAATTTGAA CCGTAGACAG AATCTAATAA 
    GTTAAAGTTT CCTTCTTTGA TTGCTTTAGA GACACCGGCG GCGAGGGCTT 
    TAGTAGAATC AGACGAAAAC CCCCGAGGGT ACAGACGATT CAGCCTCAAG 
    AACAGTGAGA AAATCCCCGG GAAACTCTTG CGTAATTGTG AAGAGGATGA 
    AGAAAGAAGA AACATGTTTC ACAGAGTTCC CATTGCCGCG AAATTGAAAA 
    CAGAGTGAAA AATGCAACCT GATTTGCCTA AGAATCGATA TAAACCAAAC 
    CGACTTAAGA TATATAATGG GCCTTTAGTA TACGGCCCAA TGGATTTACA 
    TAATTTGAAG TGACGTCCTC CATAGTTAAA AACCCTAATT GTTTTAGTTA 
    CGCCGCCGTG GAAGGACCCG GTTTATCTTC AAACCAACCC GGATAAATTA 
    AAAAAACTAT GGGCTTTACT GGGTCAGCCC AATAGACTGA TGAATACGTT 
    TCTTTATTTA ACGG

AT1G31835.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G31840.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1); Has 68904 Blast hits to 14697 proteins in 297 species: Archae - 6; Bacteria - 66; Metazoa - 698; Fungi - 1025; Plants - 65043; Viruses - 0; Other Eukaryotes - 2066 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G31840.2

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1).
Link
InterPro Scan - TAIR