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ET11011

CSHL Arabidopsis genetrap mutant lines

Original: ET11011

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET11011

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET11011 - 3-prime edge 
    GGTTTTCCTA ATCGAATCCC CGGGGAAAAT GGAACTTAGT TTTGAAAATA 
    AACTCAAAAA CAAGGAAAGG ACTCAAGCCA TAATAACCTT CCAAACCGGG 
    TTTGGGTTCT TCAACGGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27058502 [Map]; Strand: c
      • AT1G71890.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET11011 - 5-prime edge 
    TCCTACTTTC TCCCACCGGT GACGACTGTG TCTCTAACGC CGTAGCATTG 
    TTGGCGGCTC TTTCTGCTTC CAAGGCTCCC ATTATGAAAA GAAAAACGAG 
    CAGACAAAAA GAAAAGAGTT TTTTTGTTGT GAAAGTGGGG ATTTAGTTTT 
    GTGATGTAGG AGATGAGACA TTGGAGTTGT ATTTATAGGC GAGGAAGAAG 
    AAGGAATGAG ATTATTTTCC AGATAAGAGA CGCAGTTAGA AATCTCATTT 
    GTGTGAGTGC ATGACAATGT GAGGACACGT GGCAGTAGGT CATTAACTCC 
    TCTTTGTTT

AT1G71890.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Curator Summary
Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.
Computational Description
SUC5; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: seed development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 1 (TAIR:AT1G71880.1); Has 2157 Blast hits to 2049 proteins in 534 species: Archae - 36; Bacteria - 796; Metazoa - 398; Fungi - 190; Plants - 419; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).
Link
InterPro Scan - TAIR