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54-4456-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2244327 [Map]; Strand: c
      • AT3G07090.1 - [+] show detail - PPPDE putative thiol peptidase family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-4456-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATGGCT TGGCACGCCA GCTCTCACAA TCACTCCTGG 
    GAAAGGTTAT TGAAGGTGTA TGGTGAGTCA AATCTCTGTC ACATGTTCGT 
    ATTTGATCTG TTGTGTTGTA TATGCCAAAT TTGTTTTGAA CATTTGTCCT 
    GTGTAGTGCC ATTCATAGGG TTTGATATTA TTGTTTTAGC TGTTGAACAT 
    GGTTGCAGTT AACCCAATGT AAAAGATATT GGCATGACTG GTTGGTGTAT 
    GTAAATGTGT CTAAGCTTCN ATNCNGTGCC CNAANCCACG NTTGCNNTAT 
    GGCTTAGAGN CTTTTAACNN CGATACACTC TTCACNCNTT NAATANCTGG 
    CTACATGCTT AAAGTGTTAT ACTCNNTCAT ACTCATNANA TCAAGNCATA 
    TTGGACTCCA TAACANTAAC NAACCNTNNT ACTNCTTCTN AAANCTNCCA 
    ACCCCGGCCN TTNNACACCC TTGNCCCTTN ANNNNNNNNN ANNACCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2244388 [Map]; Strand: c
      • AT3G07090.1 - [+] show detail - PPPDE putative thiol peptidase family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 54-4456-1 - 3-prime edge 
    CCTTAAATCA TAGACATTCA ATGTTACCTT ATGCGCTTCC TGCCATATCA 
    CATATATCAC CAATTTCAAT CAAACTAACA ACGAGGCAAC GCAATTAACT 
    ACGAACCAGA AATGAAAAAA AGAGAATCAT ACCTCAGCCA TTGTCAAAGT 
    CCTTGAAACA CGTTAACTAC CTGAAGAAAA AAAAAATCAA AATCAAAATT 
    TACAATCGCA ANGATCTAAG ACCTGANCAN CAAGAATGAT TCCGAACAAN 
    CTNTNTCANA CCTACAAAAN AATTTCCGCA AATCTTAANA CCAAATCCNT 
    AATCGATTCC NAACAAAAAA NAACTAGTNT CCGCAAATAG AAAATCCAAA 
    TNTANAANCA ATCGGGAACN CATAATNGAT AAAATNGATA GCGANAAAGC 
    GAGGGANATT TGATCACGTN CAANCAAAAT ACGTAAACNG GCCGCTCGGA 
    AAATNGTCGA TNTGCNCAAA TNTGAAANAT TTNTNGGATA GCAANGGTTC 
    AAANAGGTTN GTTNTAAAGG CAAGCTATNG GGANATTCGA ANATTCCTNT 
    ACGACGTCGT TTAAGCTACT TTGACCCCTA TACCAACGAC CGCTTTTATT 
    CTGTAACCTT NTANAAAGTA CCATCCAATA AGACATTGCC ACGTNTNTTT 
    TCCCCGTCCC GGTTCAACCG ACCAGAATCT TTGAATCANA ATTACAGCAG 
    TTAAAACCTG AATTCCTAT

AT3G07090.1

Model type
Protein coding
Short Description
PPPDE putative thiol peptidase family protein
Computational Description
PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G25170.1); Has 872 Blast hits to 872 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 235; Fungi - 119; Plants - 332; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
Link
InterPro Scan - TAIR