1. Home
  2. Mutant Lines
  3. 54-3638-1

54-3638-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24137717 [Map]; Strand: c
      • AT5G59940.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3638-1 - 5-prime edge 
    CNTGTAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATNNC 
    CCCNTCCNAC TTCGCATCCN TGAACTCACN TGNGGNACAA CTNTNACCAG 
    CGGTATNCCA ATCGCTTTTG TCCACACAAA TCACATGGAA GATCTCCCAG 
    GCCATTGGTG AGAAAGAGAG GATGTTGTTG GTGGAAAGAG TGGCTGATCT 
    CAGATGGGGC CTCAGCGCAC TCCTTATGAA ACCGAGCTTT ACAGTCAGAA 
    TCATTGCAGA CGTACCCGCC GTAGACGAAA TCTTCTACAC CGCAGCCTTT 
    ACATGTACTA AAAACGATCC GAGCCGAAGG AAATATAGGG TGCTCGTGAA 
    TGGGTAGCTT TACTGCTCCT GTATCCATGT ATGATATATG TGAATGAGAT 
    TCTTTCTTTT CTCTTTTTAT TTAGGAGAAA TGGAAGCTGA ACGTGGAGGT 
    TAGAGAAATT TTGATCCCAT CCAACTTCCA ACAAATATGA TACAGAGTTT 
    CCAGATCAGG ATTGTAATAT TTTTATTTTA AAGTCAAAAT CAAAATATTC 
    GAATTTGATC CGAAATATGT TTTTACTTTT TAGATATATA TTCTAAACTT 
    ATAAATCATG ATTTGATAGC ATTGACTATC TATTTCCGAG AAATATTACA 
    TTGCACAACA TGCTGTAGTT GTTATTGTTG CGTTCGATAT TATATTTTAG 
    CAATATTGTT TGATATGAAT CGATTTAGCT TTTGGATTTC TATTGATTGT 
    CAAAAGTAGT TGTTCAAAAA GGGGTTCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24137721 [Map]; Strand: c
      • AT5G59940.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3638-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTCA 
    AGCTGGATTT GACTTGTGGG ATAAACCCAT CACCGCCTGC TATTGAACAT 
    CCTATCTGTC ATGACCATCC ACTTGTCTTT TTGAAGAAAC GAGAGGAGAA 
    GGCCCCTTGT GAAGTTTGCA AGGATTCTAT TGGTGGACCT TCCTATTCTT 
    GTCTTGGATG CGATCTGTAC TTCCACGTGG ATTGCGTCCA TCTCTCAAAA 
    GAGGTAAATC ATCCTTGCCA CCCTAGTCAT CCTCTCAAGC TCATCGCATC 
    TGAATCACTT ACGGATAATG CTGAGAAGAT TTGTCTTTTA TGTGAACAAC 
    AACCAGAAAA TATGCTTTAT TATTGTTCTG TTTGCAACTT CACATCATGC 
    CTTGGTTGTA CTAAACGCCC ACCACCTCTT TTTATCGAGC ATACCAAGAC 
    CCACAAGCAT CAACTTACTC TCTTTCTAAA CGGAATTTCA TATCAAGGTT 
    CCGCGCTGAC ATATAACAGC AGAGCTTATA TGTGCCTTCC TTGTGGTTTC 
    GTTGTCAATG GGAATGGTAT CAACCTACCT CAAGTCATAA ACATCAACCG 
    TCACGACCAT CGTATCTCTT ACACTCATCA GCTTGGCCCT GGATATTTGA 
    ACTGCGGAGT TTGCCGCGAA ATTGTTGACA GGGATTGTGG GGCATATGCT 
    TGTGTCGTTT GCAGTAACTA TGCAGTTCAC TGGGAATGCG CAGTACATGA 
    TAATGTATGG GATGGGGGTG GAATTAGAAG GGAN

AT5G59940.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR