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54-2486-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17470222 [Map]; Strand: c
      • AT4G37070.4 - [+] show detail - Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein
        Distance: -3113; Region: intergenic
      • AT4G37080.3 - [+] show detail - Protein of unknown function, DUF547
        Distance: -2898; Region: intergenic
    Flanking Genome Sequence: 54-2486-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT ACCAATATGT ACAGATAAAT CAGAAAAAAT 
    TGGGGAGTTT TATAATCATT TTACACAAAA TTTCTTTTGT CAATTTCCTA 
    CTACGATGGA CCATTCTCAG CTTCGAGTAC ATTTCTATTA ATTCATAAAA 
    GCCAAAACAA CCAAATATAG ATTTGTTTCT TCCATAATCT TTTCGACGTG 
    AAAAATATTA TTCTAAATTA TTTATCGCAA ATATGTTTCC TTTTACTCTT 
    ATATATAAAC CATGAGCTTT TTAAACCCAA AATATGTTAG ATATCCATCT 
    CTATTTCCAA CGTCGGATTA TAAGTCCATG TTTTCATCTT TTACATGATA 
    ATTCGACTCT AGACAAGTTA GGCTGGTGAC ATTGGACTAC TTCACTACCA 
    TGACAAAGAA ATATATCCCA TAATTTTGAA CACCACTAAG AAGATAATGT 
    CATCAATATC TTCTGTTGTC ATTTAATTTT CCACTCTTAG TGAAAATATA 
    TTCAAAATAC ACNATNACAA ACAACTTTAC AAACTAATGT TGAAAGGGTT 
    TAACTCATTA ATAACTACCC NAACCNGAAA GGGTACTATA AATATAGNNA 
    ATCATNCGNN NGGNTTCTCC AAAATTCGTA TACGATCNTA TATGATNTGA 
    ATGATNGAGA GTACNAANTA TGGCNGGNTG ACNCNNANTT GGTNACCTNN 
    GAGGNCNANC CNCNAAAAAT NGGNNGCCAN AAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17470215 [Map]; Strand: c
      • AT4G37070.4 - [+] show detail - Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein
        Distance: -3106; Region: intergenic
      • AT4G37080.3 - [+] show detail - Protein of unknown function, DUF547
        Distance: -2905; Region: intergenic
    Flanking Genome Sequence: 54-2486-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCATATTGG GAAATAAATG TCGTCGACCT TTTGTGGTGT AATGGTAAAA 
    ATTATTTTGT GAATCATTAC TAGTATTATT TTATTTATAT ACAAACAAAG 
    TTATGTCGCT AGTTTTATGG TTTATATTAA TAAATGCGAT CATTGCTAAA 
    AAAATTAATT CGTGTTACCT CTTTGATCGC CGGGTTAAGT CCAGGCCCAA 
    TACGGGGCAA CTTTATAAGG GACCACAGTG TCTGGGTCCA GCCCAAAAGT 
    AAAGGAAAGT AAAAAAAAAA AAACCCAAAA AAAAAAAAAA AANCCCNNGG 
    GGANTTTCNT TANCTNCNCN TTNGGNGGGC CCNTTTTTTT NTNGNAAANG 
    GNAAANNTNN CCCNGNNTTC NTTTTNNTTN GNAAAAATNG AAAAACCCCN 
    TTTNGNGNAT NNNGCTNTAA ATTTGNCCCT TNTTTTTNNC CNNTTTTTAA 
    AAGGGAANGN NNAAATTTTT TTNTNATNGG GNCNANNTTT NAAAANCTTT 
    NAANTTTTTT TTCCCTNNCN AAAANCTTTN NNGTTNAAAA TTAAAAAANN 
    NAAAAANGGC CAAAANGGNA NTNNAAAGTT TNNNTNAAAA NNANNTTTAA 
    NTTNTTNANC AANGGGACCC CTANGAAAAN TTTTTTTTTT GNTCNCNANA 
    AAATTTTTTA ATNCATNAAN CCCGGCCGGG GTNGAACCTA AAAAAGNTTT 
    TTTTTTTAAA AA

AT4G37070.4

Model type
Protein coding
Short Description
Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein
Curator Summary
Patatin-related phospholipase A. Expressed strongly and exclusively in roots. AtplaIVA-null mutants have reduced lateral root development. Phosphorylation by calcium-dependent protein kinases in vitro enhances its activity.
Computational Description
PLP1; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PATATIN-like protein 5 (TAIR:AT4G37060.1); Has 1996 Blast hits to 1989 proteins in 369 species: Archae - 0; Bacteria - 491; Metazoa - 206; Fungi - 135; Plants - 869; Viruses - 0; Other Eukaryotes - 295 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37080.3

Model type
Protein coding
Short Description
Protein of unknown function, DUF547
Computational Description
Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2).
Link
InterPro Scan - TAIR