1. Home
  2. Mutant Lines
  3. 54-1602-1

54-1602-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2985313 [Map]; Strand: w
      • AT5G09620.1 - [+] show detail - Octicosapeptide/Phox/Bem1p family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1602-1 - 5-prime edge 
    GTTCTGCTGC TGCTGGTCCT CCCATGGCGA CGGATTTTCA AATTCGACAT 
    CGCGAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3709376 [Map]; Strand: c
      • AT5G11550.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -130; Region: promoter
    Flanking Genome Sequence: 54-1602-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ANCGACCGTT ACCGACCGTT TTACGATTTG 
    GACGAGGGTT TAAGTATAAT GGCGACATCT TTGTNNTTTT GGATCAATCA 
    TTATCTGAAG ACGATAAAAT GCAGGCTGAT TTGGGTCTTA AAACATGGAA 
    TTTATTGCTG TTTACAAAAA TGAAAAGGTT AAACAGAGGC TTCTATAAAC 
    CTTTAAATTC AGAAGGTGCA GCTCAACTCT AGAATGNGAC AAAGGTCACA 
    AAGCAAGAGT CTGTAAAGTG TACTCGATTT CCAAAGCCTA ACATCAAGAA 
    TTTAGCTAAG ACAATGGTTT TTTCTTCTAA GAGTGCGAAA AATGGTTCAT 
    AAACATTCTA CAATGTGAAA AAGCCCAAAG AGAGGAAGGA TTTTAAACCT 
    TACGGTTCCA ATCACCTCCA TTTTTCGCTT AGTTCTTTCT TCTCTGAAAG 
    GACCCATGTG ATGTAGATGG CTGCAACAAG TGCTACAATC GTGATCAGGA 
    GAAGAGCGTA GCTGAAATCG TCAGTTAGTG AGTCGTAGGT CTTTGAANGA 
    GCAAGCCTTG TGTAGAAGAG ATCCACTCCA TAGGCAAAGA CGTGTGTTGT 
    TGACTCTAGC TTGGACNGAG CTGTTACTAT GCCTCTTANA CCTTCTACTT 
    TGTGGGAGTG TGGAACATAC NCCTGTGGGA TTTGACAAGN GCCGTTANAA 
    ACTATACNTC NCTTAATCTA NCTGTNNCCA AANCNNGGGG NTGGNTCANN 
    NNNANNAAAA ANAAAAAA

AT5G09620.1

Model type
Protein coding
Short Description
Octicosapeptide/Phox/Bem1p family protein
Computational Description
Octicosapeptide/Phox/Bem1p family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT5G64430.1); Has 18668 Blast hits to 11149 proteins in 562 species: Archae - 0; Bacteria - 597; Metazoa - 7421; Fungi - 2059; Plants - 1927; Viruses - 138; Other Eukaryotes - 6526 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11550.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 26 (TAIR:AT1G49780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR