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54-0045-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13496398 [Map]; Strand: c
      • AT4G26830.1 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: 0; Region: intron1 (CDS)
      • AT4G26840.1 - [+] show detail - small ubiquitin-like modifier 1
        Distance: -928; Region: promoter
    Flanking Genome Sequence: 54-0045-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT ATGTCTGTCT CTGTATTTGC CGTGTCTACT 
    ACGTTGTTCT TATTTTGCGT TTTTTTTGTT TTTGTTTCTA CAGATTCTGG 
    AATGGTCGGA GTCAATTATG GTCGGATAGC TAACAACCTC CCGTCGCCGG 
    AGAAAGTAGT GAACCTCCTG AAATCTCAAG GAATCAACCG TATCAAAATC 
    TTCGACACCG ATAAGAATGT ACTAACCGCA CTTGCAAATT CCAAAATCAA 
    AGTAATCGTC GCTCTCCCTA ACGAGCTTCT CTCCTCCGCC GCCTCCCACC 
    AATCATTCGC CGACAACTGG ATTAAAACCC ACATAATGCC ATACTTCCCA 
    GCGACGGAGA TCGAAACTAT CGCCGTCGGT AACGAAGTAT TCGTCGATCC 
    GACGATCACG CCGTATCTTG TCAATGCGAT GAAGAACATT CACACCTCTC 
    TGGTTAAGTA TAAACTCGAC AAAGCCATCA AGATC

AT4G26830.1

Model type
Protein coding
Short Description
O-Glycosyl hydrolases family 17 protein
Computational Description
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G55180.1); Has 2849 Blast hits to 2768 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 2823; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26840.1

Model type
Protein coding
Short Description
small ubiquitin-like modifier 1
Curator Summary
Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.
Computational Description
small ubiquitin-like modifier 1 (SUMO1); CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: small ubiquitin-like modifier 2 (TAIR:AT5G55160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR