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53-4570-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19013518 [Map]; Strand: w
      • AT5G46860.1 - [+] show detail - Syntaxin/t-SNARE family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-4570-1 - 5-prime edge 
    TTCACAAGCT GTCCAATATG CAACCTTGTC TTGTGCCTAT CACAAGAAAT 
    TCCAATAATA ATTTCTAAAT TCAGAATCCA CAAAAAAAAC AATCAAAATT 
    GAAATCAAAA ATTCAATTGT TTTAATCAAA TGAAATTTAG ATTTCAATTT 
    CAACATACAG CTTCTCCCGG AGCTCCGGTG TATCTTTGGG AGTACCAAGT 
    GTGTTAACGA GTCGCTGAAA CGTGGAGACT CCGGTATTGA TCTGGAATAT 
    TCCAGAAGCA ACGGCTTGTG TCGAATCTTG TCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19013402 [Map]; Strand: w
      • AT5G46860.1 - [+] show detail - Syntaxin/t-SNARE family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-4570-1 - 3-prime edge 
    CTTGTGAAGG ATACTTCAGC TAAACTTAAA GAAGCTAGTG AAACTGATCA 
    TCAAAGCGGT GTCAATGTAA AGTGGAATCT TTTTCTTCTT GTTTGGTTTT 
    TAAGCGACTC TTTGTTGTGT GTTTGATTGT TGTGTAATTG TGTAGCCAAG 
    TAAGAAGATT GCAGATGCTA AGCT

AT5G46860.1

Model type
Protein coding
Short Description
Syntaxin/t-SNARE family protein
Curator Summary
Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164
Computational Description
VACUOLAR MORPHOLOGY 3 (VAM3); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: in 7 processes; LOCATED IN: late endosome, trans-Golgi network transport vesicle, plant-type vacuole membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 23 (TAIR:AT4G17730.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR